This API controller broke with the latest release from earlier this
week - I have since fixed this in galaxy-central and opened a pull
request to have it fixed in the stable branch. Otherwise I think it
was worked for quite some time. The bioblend commands should be
something like this...
>>> gi = galaxy.GalaxyInstance(url="<url>", key="<key>")
>>> l = gi.libraries.create_library("testlib")
>>> gi.libraries.set_library_permissions( l['id'], access_in=['<role id>'] ) #
>>> Require a role id to access get from /api/roles
>>> gi.libraries.set_library_permissions( l['id'], access_in=[], modify_in=[],
>>> add_in=[], manage_in=[] ) # reset all permissions
If you have a very new Galaxy, please apply this patch -
https://bitbucket.org/galaxy/galaxy-central/commits/c4291f95313abcb1ad91ffe4faaa2c30b05149dc.
Otherwise can you try using the commands as shown above - lists of
role ids. If that doesn't work there should be some stack traces in
the galaxy log to help diagnose the problem. Please feel free to
follow up with these.
Hope this helps - let me know if there are still problems.
-John
On Tue, Apr 15, 2014 at 2:17 AM, Kevin Muret <kmu...@sb-roscoff.fr> wrote:
> Hello to all,
>
> In recent days, I try to do the "set_library_permissions ()" bioblend's
> function working.
>
> I tried the following syntaxes, and it was unsuccessful. Anybody know how to
> use it? Or otherwise, how would it be possible to modify user access to
> libraries (or contents)?
>
> ----------------------------------------------
>
> Bonjour à tous,
>
> Depuis quelques jours, je tente de faire fonctionner la fonction
> "set_library_permissions()".
>
> J'ai tenté les syntaxes suivantes, et ce fût sans succès. Quelqu'un
> saurait-il comment l'utiliser ? Ou comment serait-il possible de modifier
> les accès utilisateurs d'une autre manière ?
>
> ----------------------------------------------
>
> "instance" is opened with an admin API key.
>
> 1 --> print
> instance.libraries.set_library_permissions(library_id="417e33144b294c21",
> access_in=None, modify_in=None, add_in=None, manage_in=None)
>
> Traceback (most recent call last):
> File "Workflow_Lib/work_test.py", line 76, in <module>
> main()
> File "Workflow_Lib/work_test.py", line 39, in main
> print
> instance.libraries.set_library_permissions(library_id="417e33144b294c21",
> access_in=None, modify_in=None, add_in=None, manage_in=None)
> File
> "/home/gcc2013/lib/bioblend/lib/python2.7/site-packages/bioblend-0.4.3_dev-py2.7.egg/bioblend/galaxy/libraries/__init__.py",
> line 308, in set_library_permissions
> return Client._post(self, payload, url=url)
> File
> "/home/gcc2013/lib/bioblend/lib/python2.7/site-packages/bioblend-0.4.3_dev-py2.7.egg/bioblend/galaxy/client.py",
> line 181, in _post
> r = self.gi.make_post_request(url, payload=payload,
> files_attached=files_attached)
> File
> "/home/gcc2013/lib/bioblend/lib/python2.7/site-packages/bioblend-0.4.3_dev-py2.7.egg/bioblend/galaxyclient.py",
> line 99, in make_post_request
> r.status_code, body=r.text) # @see self.body for HTTP response body
> bioblend.galaxy.client.ConnectionError: Unexpected response from galaxy:
> 500: <html>
> <head><title>Internal Server Error</title></head>
> <body>
> <h1>Internal Server Error</h1>
> <p>The server has either erred or is incapable of performing
> the requested operation.
>
> <br/>
> <!-- --></p>
> <hr noshade>
> <div align="right">WSGI Server</div>
> </body>
> </html>
>
> 2 --> print
> instance.libraries.set_library_permissions(library_id="417e33144b294c21",
> access_in=[admin_id], modify_in=[admin_id], add_in=[admin_id],
> manage_in=[admin_id])
>
> 3 --> Moreover, are we supposed to view the content of this page?
> http://localhost:8080/api/libraries/417e33144b294c21/permissions
>
> ----------------------------------------------
>
> Thank you in advance to the community for your help,
>
> Kevin MURET
> Intern at Station Biologique de Roscoff
> ABiMS platform
>
>
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