Hey Peter, Just looking at the travis job, it looks like there's not a fetch_eggs step at the start, but rather that it's fetching as they're require()'d. Is that correct? In any event, I'm changing the order of those requires in 13302:92519a9bfa32, which may resolve your issue. They work fine like that in production with eggs fetched ahead of time, but I could see how that'd cause the failure you're seeing.
-Dannon On Mon, May 5, 2014 at 9:14 AM, Peter Cock <p.j.a.c...@googlemail.com>wrote: > Hi all, > > Recently my TravisCI tests have started failing during the tool > functional tests due to what looks like a missing dependency: > e.g. https://travis-ci.org/peterjc/pico_galaxy/jobs/24444682 > > ... > galaxy.eggs DEBUG 2014-05-05 11:26:47,387 Fetched > http://eggs.galaxyproject.org/boto/boto-2.27.0-py2.7.egg > galaxy.eggs DEBUG 2014-05-05 11:26:47,753 Fetched > http://eggs.galaxyproject.org/bioblend/bioblend-0.4.2-py2.7.egg > Traceback (most recent call last): > File "./scripts/functional_tests.py", line 601, in <module> > sys.exit( main() ) > File "./scripts/functional_tests.py", line 417, in main > use_translogger=False, static_enabled=STATIC_ENABLED ) > File > "/home/travis/build/peterjc/pico_galaxy/galaxy-central-master/lib/galaxy/webapps/galaxy/buildapp.py", > line 49, in app_factory > webapp.add_ui_controllers( 'galaxy.webapps.galaxy.controllers', app ) > File > "/home/travis/build/peterjc/pico_galaxy/galaxy-central-master/lib/galaxy/web/framework/__init__.py", > line 441, in add_ui_controllers > module = import_module( module_name ) > File > "/home/travis/build/peterjc/pico_galaxy/galaxy-central-master/lib/galaxy/util/backports/importlib/__init__.py", > line 37, in import_module > __import__(name) > File > "/home/travis/build/peterjc/pico_galaxy/galaxy-central-master/lib/galaxy/webapps/galaxy/controllers/cloudlaunch.py", > line 20, in <module> > eggs.require('pyyaml') > File > "/home/travis/build/peterjc/pico_galaxy/galaxy-central-master/lib/galaxy/eggs/__init__.py", > line 412, in require > return pkg_resources.working_set.require( req_str ) > File > "/home/travis/build/peterjc/pico_galaxy/galaxy-central-master/lib/pkg_resources.py", > line 666, in require > needed = self.resolve(parse_requirements(requirements)) > File > "/home/travis/build/peterjc/pico_galaxy/galaxy-central-master/lib/pkg_resources.py", > line 565, in resolve > raise DistributionNotFound(req) # XXX put more info here > pkg_resources.DistributionNotFound: pyyaml > > > Is there a missing egg declaration for pyyaml? > > I found this commit about a PyYAML 3.10 egg., perhaps linked? > > https://bitbucket.org/galaxy/galaxy-central/commits/c36dc4155beb0ae5e117ca33e0ad231535186d6d > > Thanks, > > Peter > ___________________________________________________________ > Please keep all replies on the list by using "reply all" > in your mail client. To manage your subscriptions to this > and other Galaxy lists, please use the interface at: > http://lists.bx.psu.edu/ > > To search Galaxy mailing lists use the unified search at: > http://galaxyproject.org/search/mailinglists/ >
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