On Mon, May 12, 2014 at 11:40 AM, Peter Cock <p.j.a.c...@googlemail.com> wrote:
> On Wed, May 7, 2014 at 3:01 PM, Peter Cock <p.j.a.c...@googlemail.com> wrote:
>> Hi Dave,
>>
>> Can you tell me any more about this failed tool dependency error:
>> http://testtoolshed.g2.bx.psu.edu/view/peterjc/mira4_assembler
>>
>> Installation errors
>> Tool dependencies
>> TypeNameVersion
>> MIRA package 4.0
>> Error
>> File 
>> "/var/opt/buildslaves/buildslave-ec2-2/buildbot-install-test-test-tool-shed-py27/build/lib/tool_shed/galaxy_install/tool_dependencies/install_util.py",
>> line 345, in install_and_build_package_via_fabric tool_dependency =
>> fabric_util.install_and_build_package( app, tool_shed_repository,
>> tool_dependency, actions_dict ) File
>> "/var/opt/buildslaves/buildslave-ec2-2/buildbot-install-test-test-tool-shed-py27/build/lib/tool_shed/galaxy_install/tool_dependencies/fabric_util.py",
>> line 93, in install_and_build_package initial_download=False ) File
>> "/var/opt/buildslaves/buildslave-ec2-2/buildbot-install-test-test-tool-shed-py27/build/lib/tool_shed/galaxy_install/tool_dependencies/recipe/recipe_manager.py",
>> line 418, in execute_step initial_download=initial_download ) File
>> "/var/opt/buildslaves/buildslave-ec2-2/buildbot-install-test-test-tool-shed-py27/build/lib/tool_shed/galaxy_install/tool_dependencies/recipe/step_handler.py",
>> line 1312, in execute_step return_output=False ) File
>> "/var/opt/buildslaves/buildslave-ec2-2/buildbot-install-test-test-tool-shed-py27/build/lib/tool_shed/galaxy_install/tool_dependencies/recipe/recipe_manager.py",
>> line 247, in handle_command output = self.handle_complex_command(
>> command ) File 
>> "/var/opt/buildslaves/buildslave-ec2-2/buildbot-install-test-test-tool-shed-py27/build/lib/tool_shed/galaxy_install/tool_dependencies/recipe/recipe_manager.py",
>> line 287, in handle_complex_command cwd=state.env[ 'lcwd' ] ) File
>> "/usr/lib/python2.7/subprocess.py", line 711, in __init__ errread,
>> errwrite) File "/usr/lib/python2.7/subprocess.py", line 1308, in
>> _execute_child raise child_exception [Errno 2] No such file or
>> directory: 
>> '/var/opt/buildslaves/buildslave-ec2-2/buildbot-install-test-test-tool-shed-py27/build/test/install_and_test_tool_shed_repositories/repositories_with_tools/tmp/tmpxFCguW/tmp-toolshed-mtdt0b857/MIRA'
>>
>> I presume this was a Python stack trace but the whitespace
>> has been lost when rendered as HTML. However, I don't quite
>> see what is going wrong here...
>
> Still failing. This is presumably something in my tool_dependencies.xml
> which is breaking... that defines <package name="MIRA" version="4.0">
>
> I've recently been changing the download URL - is it possible that
> the ToolShed didn't catch a failed download?
>
> Thanks,
>
> Peter

I'm pretty sure the above failure is down to a broken URL - due to
a change on the project files for MIRA, see:
http://www.freelists.org/post/mira_talk/Stable-download-URLs-on-sourceforge

If I am right, then the ToolShed is not handling the failed download nicely?

I've just updated this to download MIRA v4.0.2, so fingers crossed...
http://testtoolshed.g2.bx.psu.edu/view/peterjc/mira4_assembler

Peter
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