aahh, that must be it, thanks Bjoern!

I have the symbolic link, but I did not have the 'requirements' section
correct. 

thanks so much for your help,

Isabelle



On 6/5/14 9:27 AM, "Björn Grüning" <bjoern.gruen...@gmail.com> wrote:

>Hi Isabelle,
>
>can you show us the "requirements" section from your tool?
>Also you need to have a symbolic link from
>tool_dependency_dir/hhsuite/2.0.16/ ponting to
>tool_dependency_dir/hhsuite/default/
>
>In tool_dependency_dir/hhsuite/default/ should be the env.sh file. If
>you have the correct "requirements" section in your tool it should work.
>
>Good luck!
>Bjoern
>
>
>Am 04.06.2014 01:17, schrieb Isabelle Phan:
>> I am using env.sh to manage my tool dependencies:
>>
>> # tool_dependency_dir/hhsuite/2.0.16/env.sh
>> export HHPRED_DIR=/opt/galaxy-dist/tool_dependencies/hhsuite/default
>> export HHLIB=${HHPRED_DIR}/lib/hh
>> export PATH=${HHPRED_DIR}/bin:${HHLIB}/scripts:$PATH
>>
>>
>> Galaxy is not sourcing it. I have to manually source it before I restart
>> Galaxy.
>>
>> I am following "Using the env.sh file" and cannot get it to work. What
>>am
>> I missing?
>>
>> Any help greatly appreciated,
>>
>> thanks,
>>
>> Isabelle
>>
>>
>>
>>
>> ___________________________________________________________
>> Please keep all replies on the list by using "reply all"
>> in your mail client.  To manage your subscriptions to this
>> and other Galaxy lists, please use the interface at:
>>    http://lists.bx.psu.edu/
>>
>> To search Galaxy mailing lists use the unified search at:
>>    http://galaxyproject.org/search/mailinglists/
>>


___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
  http://lists.bx.psu.edu/

To search Galaxy mailing lists use the unified search at:
  http://galaxyproject.org/search/mailinglists/

Reply via email to