I have two use cases: the first is for a modification of the ncbi blast
wrapper to limit the query input size (for a publically accessible galaxy
instance), so this needs a configuration option for the query size limit. I
was thinking about a separate config file in tool-data for this.

The second is is for a tool I have written to convert a blast xml output
into a html report. The report contains links for each match to a gene bank
(e.g. the ncbi database). These links should be configurable per database
that was searched, and preferrably have an option of linking to the
location of the match within the gene if the gene bank supports such links.
One option is to add an extra column to the blast .loc files (if that
doesn't break blast), where the databases are already configured.

Jan
Op 13 jun. 2014 18:02 schreef "John Chilton" <jmchil...@gmail.com> het
volgende:

> I would have different answers for your depending on what options are
> available to the server admin. What exactly about the tool is
> configurable - can you be more specific?
>
> -John
>
> On Fri, Jun 13, 2014 at 10:59 AM, Jan Kanis <jan.c...@jankanis.nl> wrote:
> > I am writing a tool that should be configurable by the server admin. I am
> > considering adding a configuration file, but where should such a file be
> > placed? Is the tool-data directory the right place? Is there another
> > standard way for per-tool configuration?
> >
> > Jan
> >
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