On Thu, Jul 17, 2014 at 4:31 PM, Eric Rasche <rasche.e...@yandex.ru> wrote: > -----BEGIN PGP SIGNED MESSAGE----- > Hash: SHA1 > > For those reading this thread from the future, there's a secret to > adding completely new datatypes locally (and not through a toolshed). > > You have to manually edit lib/galaxy/datatypes/registry.py and import > the module you've written at the top of the file. > > For instance, if you add a new "gbk.py" datatype, you'll need to add > "import gbk" to the top of registry.py. This will cause your errors to > go away and your datatype to be loaded on startup. > > Thanks to John Chilton for answering this on IRC. > > Cheers, > Eric
Indeed - sorry I hadn't spotted that complication. The README files for these datatype extensions may help: https://github.com/peterjc/galaxy_blast/tree/master/datatypes/blast_datatypes https://github.com/peterjc/pico_galaxy/tree/master/datatypes/mira_datatypes I have to do this manually with some sed magic in my TravisCI automated set setup, see: http://blastedbio.blogspot.co.uk/2013/09/using-travis-ci-for-testing-galaxy-tools.html Peter ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
