First time posting so I hope I do this correctly.

I am using galaxy locally and installed the ea-utils fastq-mcf (FastqMcf). When 
using the trimming options (not defaults) the -C option gets set to the -s 
option. I checked the fastq-mcf.xml wrapper and indeed there is an mistake on 
line 42.

 -s $trimming.sampcnt

Should be
 -C $trimming.sampcnt

I hope this helps,
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