Hi Björn, 

It looks like this.

<tool id="screen_reads" name="Screen Reads">

<description>against hg19</description>

<command interpreter="bash">screen_reads.sh $Project.input $Project.samples 
$Project $Samples </command>

<inputs>
    <conditional name="Project">
        <param name="input" type="select" label="Select project">
            <option value="galaxy_test1">galaxy_test1</option>
            <option value="Untitled Folder">Untitled Folder</option>
        </param>
        <when value="galaxy_test1">
            <param name="samples" type="select" label="Select samples" 
display="checkboxes" multiple="True">
                <option value="147406386-700171390">147406386-700171390</option>
                <option value="158256496-700097688">158256496-700097688</option>
                <option value="158337416-700013715">158337416-700013715</option>
                <option value="158337416-700097837">158337416-700097837</option>
                <option value="158357646-700035237">158357646-700035237</option>
                <option value="158458797-700014562">158458797-700014562</option>
                <option value="158479027-700014724">158479027-700014724</option>
                <option value="158479027-700097196">158479027-700097196</option>
                <option value="158499257-700014837">158499257-700014837</option>
                <option value="158499257-700098561">158499257-700098561</option>
                <option value="158742018-700015181">158742018-700015181</option>
                <option value="158802708-700015245">158802708-700015245</option>
                <option value="158802708-700015250">158802708-700015250</option>
                <option value="158802708-700099803">158802708-700099803</option>
                <option value="158802708-700119165">158802708-700119165</option>
                <option value="158822939-700014954">158822939-700014954</option>
                <option value="158883629-700015113">158883629-700015113</option>
                <option value="158883629-700100227">158883629-700100227</option>
                <option value="158883629-700112812">158883629-700112812</option>
                <option value="158924089-700099307">158924089-700099307</option>
            </param>
        </when>
        <when value="Untitled Folder">
            <param name="samples" type="select" label="Select samples" 
display="checkboxes" multiple="True">
            </param>
        </when>
    </conditional>
</inputs>

<outputs>
    <data format="tabular" name="Project" label="Project" 
from_work_dir="/eva/projects/smash/MOCAT/test/martin/$Project.input/$Project.input"/>
    <data format="tabular" name="Samples" label="Samples" 
from_work_dir="/eva/projects/smash/MOCAT/test/martin/$Project.input/$Project.samples"/>
</outputs>

<help>
Reads screened against hg19.
</help>
</tool>

Best,
Martin
                                          
___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
  http://lists.bx.psu.edu/

To search Galaxy mailing lists use the unified search at:
  http://galaxyproject.org/search/mailinglists/

Reply via email to