Hey Brad, Pretty sure John is right here; I didn't realize we even had any of those unencoded id checks still around. John, I agree they should go away at this point.
-Dannon On Sun, Aug 10, 2014 at 5:13 AM, John Chilton <jmchil...@gmail.com> wrote: > Doubt this is job metrics related - fairly certain the problematic line is: > > > https://bitbucket.org/galaxy/galaxy-central/src/default/lib/galaxy/webapps/galaxy/controllers/dataset.py?at=default#cl-112 > > It tried to determine if a dataset id is encoded or not by hitting the > database. It could possible just check the ID without hitting the > database like this: > > > https://bitbucket.org/galaxy/galaxy-central/src/default/lib/galaxy/webapps/galaxy/controllers/tool_runner.py?at=default#cl-130 > > But then there is the one-in-a-billion datasets that happen to fail > this second check even though they are encoded - which I think > happened to Lance one time: > > https://trello.com/c/AzWW0dDd (in comments) > > So I wouldn't worry about this - it is not a bug it is not a bug per > se. Hopefully both these checks for unencoded ids can just go away - > everything should be encoded now? I'll create a Trello card. > > -John > > > On Sat, Aug 9, 2014 at 9:50 PM, Langhorst, Brad <langho...@neb.com> wrote: > > Hi Dannon: > > > > I just happened to notice this when looking for another problem. > > There are a few notices in the logs (pasted below). > > > > So I don’t know why the job failed… we have lots of job failures though > > (people learning what they’re doing) > > > > This could be related to job metrics… I do have that turned on. > > > > Interesting that it seems to be for certain datasets multiple times… not > > sure what that means. > > > > > > I’m running the most recent stable distribution. > > > > > > > > Brad > > grep "invalid input syntax for integer" * > > postgresql-Fri.log:< 2014-08-08 14:28:59.707 EDT >ERROR: invalid input > > syntax for integer: "49972967cbdd31bf" at character 2721 > > postgresql-Fri.log:< 2014-08-08 14:31:16.226 EDT >ERROR: invalid input > > syntax for integer: "b77d1ea36a7250f7" at character 2721 > > postgresql-Mon.log:< 2014-08-04 10:07:37.126 EDT >ERROR: invalid input > > syntax for integer: "270da62aa76049d0" at character 2721 > > postgresql-Mon.log:< 2014-08-04 10:47:14.995 EDT >ERROR: invalid input > > syntax for integer: "72ad64a92e81c05e" at character 2721 > > postgresql-Mon.log:< 2014-08-04 10:51:51.417 EDT >ERROR: invalid input > > syntax for integer: "72ad64a92e81c05e" at character 2721 > > postgresql-Mon.log:< 2014-08-04 12:37:34.711 EDT >ERROR: invalid input > > syntax for integer: "bd58eac042bdbc07" at character 2721 > > postgresql-Mon.log:< 2014-08-04 16:32:22.972 EDT >ERROR: invalid input > > syntax for integer: "196f590f5ff39e1a" at character 2721 > > postgresql-Mon.log:< 2014-08-04 16:32:59.205 EDT >ERROR: invalid input > > syntax for integer: "196f590f5ff39e1a" at character 2721 > > postgresql-Mon.log:< 2014-08-04 16:53:42.061 EDT >ERROR: invalid input > > syntax for integer: "83474adb31f2c058" at character 2721 > > postgresql-Mon.log:< 2014-08-04 17:11:35.156 EDT >ERROR: invalid input > > syntax for integer: "a41888ad995eb533" at character 2721 > > postgresql-Mon.log:< 2014-08-04 17:31:36.930 EDT >ERROR: invalid input > > syntax for integer: "b11c79a044405a2a" at character 2721 > > postgresql-Mon.log:< 2014-08-04 18:22:03.623 EDT >ERROR: invalid input > > syntax for integer: "24a943e6f4a29f4a" at character 2721 > > postgresql-Mon.log:< 2014-08-04 18:28:49.471 EDT >ERROR: invalid input > > syntax for integer: "86dfc6e4c9cce855" at character 2721 > > postgresql-Sat.log:< 2014-08-09 14:18:23.045 EDT >ERROR: invalid input > > syntax for integer: "7d3bfe1e356e7080" at character 2721 > > postgresql-Tue.log:< 2014-08-05 11:35:48.801 EDT >ERROR: invalid input > > syntax for integer: "6db657495fed0283" at character 2721 > > postgresql-Tue.log:< 2014-08-05 11:42:49.568 EDT >ERROR: invalid input > > syntax for integer: "ed396693b50513d4" at character 2721 > > postgresql-Tue.log:< 2014-08-05 11:59:00.467 EDT >ERROR: invalid input > > syntax for integer: "2a70b08a2fcb0a55" at character 2721 > > postgresql-Tue.log:< 2014-08-05 12:05:18.614 EDT >ERROR: invalid input > > syntax for integer: "76563aa4638621ff" at character 2721 > > postgresql-Tue.log:< 2014-08-05 13:07:40.330 EDT >ERROR: invalid input > > syntax for integer: "0ee316c13ff7f765" at character 2721 > > postgresql-Tue.log:< 2014-08-05 14:26:15.277 EDT >ERROR: invalid input > > syntax for integer: "0bf6863f6ac1fe4c" at character 2721 > > postgresql-Tue.log:< 2014-08-05 14:48:32.188 EDT >ERROR: invalid input > > syntax for integer: "86b9abc3d918bc58" at character 2721 > > postgresql-Tue.log:< 2014-08-05 14:49:19.149 EDT >ERROR: invalid input > > syntax for integer: "86b9abc3d918bc58" at character 2721 > > postgresql-Tue.log:< 2014-08-05 14:58:52.634 EDT >ERROR: invalid input > > syntax for integer: "0bf6863f6ac1fe4c" at character 2721 > > postgresql-Tue.log:< 2014-08-05 16:08:43.447 EDT >ERROR: invalid input > > syntax for integer: "fbea15ad7b6a3c1c" at character 2721 > > postgresql-Wed.log:< 2014-08-06 14:57:47.711 EDT >ERROR: invalid input > > syntax for integer: "a328cf0b6432c591" at character 2721 > > postgresql-Wed.log:< 2014-08-06 15:01:59.911 EDT >ERROR: invalid input > > syntax for integer: "669c887f39dcb67f" at character 2721 > > postgresql-Wed.log:< 2014-08-06 15:04:26.964 EDT >ERROR: invalid input > > syntax for integer: "a328cf0b6432c591" at character 2721 > > postgresql-Wed.log:< 2014-08-06 15:20:06.512 EDT >ERROR: invalid input > > syntax for integer: "dcdc4c79298533e4" at character 2721 > > postgresql-Wed.log:< 2014-08-06 15:22:41.220 EDT >ERROR: invalid input > > syntax for integer: "054cf6e4a4f90798" at character 2721 > > postgresql-Wed.log:< 2014-08-06 15:25:22.955 EDT >ERROR: invalid input > > syntax for integer: "054cf6e4a4f90798" at character 2721 > > postgresql-Wed.log:< 2014-08-06 15:44:16.015 EDT >ERROR: invalid input > > syntax for integer: "054cf6e4a4f90798" at character 2721 > > postgresql-Wed.log:< 2014-08-06 15:44:26.196 EDT >ERROR: invalid input > > syntax for integer: "d9e57b7bae035246" at character 2721 > > postgresql-Wed.log:< 2014-08-06 15:45:03.724 EDT >ERROR: invalid input > > syntax for integer: "d9e57b7bae035246" at character 2721 > > > > -- > > Brad Langhorst, Ph.D. > > Applications and Product Development Scientist > > > > On Aug 8, 2014, at 10:40 AM, Dannon Baker <dannon.ba...@gmail.com> > wrote: > > > > Hey Brad, > > > > So I've dug around and replicated all the requests in the web log you > sent > > (central#default tip -- what revision are you running?), but I'm not > seeing > > any unencoded id queries my sql logs (expected this more or less, w/ all > of > > the requests in your web log being 200 OK's). The next guess is that it > has > > to do with job metrics or metadata. The job itself failed, do you know > why > > that is? What job metrics do you have enabled? And has this been a > > consistent issue, or you just happened to notice the error this one time? > > > > -Dannon > > > > > > On Tue, Aug 5, 2014 at 5:53 PM, Langhorst, Brad <langho...@neb.com> > wrote: > >> > >> I tried to do some time correlation between galaxy logs and postgres > logs… > >> > >> postgres > >> 2014-08-01 17:15:15.643 EDT > >> > >> > >> handler1.log > >> galaxy.jobs.output_checker INFO 2014-08-01 17:15:08,875 Job 123681: > Fatal > >> error: Exit code 1 (Interval subtraction error) > >> galaxy.jobs DEBUG 2014-08-01 17:15:08,948 setting dataset state to > ERROR > >> galaxy.jobs INFO 2014-08-01 17:15:09,196 Collecting job metrics for > >> <galaxy.model.Job object at 0x7fcbacccbb50> > >> galaxy.jobs DEBUG 2014-08-01 17:15:09,208 job 123681 ended > >> galaxy.datatypes.metadata DEBUG 2014-08-01 17:15:09,208 Cleaning up > >> external metadata files > >> galaxy.jobs.runners.drmaa DEBUG 2014-08-01 17:17:32,338 (123678/1521440) > >> state change: job finished normally > >> > >> handler0.log > >> laxy.datatypes.metadata DEBUG 2014-08-01 17:14:40,572 loading metadata > >> from file for: HistoryDatasetAssociation 192134 > >> galaxy.jobs INFO 2014-08-01 17:14:40,804 Collecting job metrics for > >> <galaxy.model.Job object at 0x7f15fc281850> > >> galaxy.jobs DEBUG 2014-08-01 17:14:40,815 job 123680 ended > >> galaxy.datatypes.metadata DEBUG 2014-08-01 17:14:40,815 Cleaning up > >> external metadata files > >> python path is: > >> /mnt/galaxy/data/galaxy/galaxy-dist/eggs/kombu-3.0.12-py2.7.egg, > >> /mnt/galaxy/data/galaxy/galaxy-dist/eggs/anyjson-0.3.3-py2.7.egg, > >> > /mnt/galaxy/data/galaxy/galaxy-dist/eggs/numpy-1.6.0-py2.7-linux-x86_64-ucs2.egg, > >> > /mnt/galaxy/data/galaxy/galaxy-dist/eggs/pysam-0.4.2_kanwei_b10f6e722e9a-py2.7-linux-x86_64-ucs2.egg, > >> > /mnt/galaxy/data/galaxy/galaxy-dist/eggs/mercurial-2.2.3-py2.7-linux-x86_64-ucs2.egg, > >> > /mnt/galaxy/data/galaxy/galaxy-dist/eggs/pycrypto-2.5-py2.7-linux-x86_64-ucs2.egg, > >> > /mnt/galaxy/data/galaxy/galaxy-dist/eggs/python_lzo-1.08_2.03_static-py2.7-linux-x86_64-ucs2.egg, > >> > /mnt/galaxy/data/galaxy/galaxy-dist/eggs/bx_python-0.7.2-py2.7-linux-x86_64-ucs2.egg, > >> /mnt/galaxy/data/galaxy/galaxy-dist/eggs/amqp-1.4.3-py2.7.egg, > >> /mnt/galaxy/data/galaxy/galaxy-dist/eggs/pexpect-2.4-py2.7.egg, > >> > /mnt/galaxy/data/galaxy/galaxy-dist/eggs/SQLAlchemy-0.7.9-py2.7-linux-x86_64-ucs2.egg, > >> /mnt/galaxy/data/galaxy/galaxy-dist/eggs/Babel-1.3-py2.7.egg, > >> /mnt/galaxy/data/galaxy/galaxy-dist/eggs/pytz-2013.9-py2.7.egg, > >> /mnt/galaxy/data/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg, > >> /mnt/galaxy/data/galaxy/galaxy-dist/eggs/WebHelpers-1.3-py2.7.egg, > >> > /mnt/galaxy/data/galaxy/galaxy-dist/eggs/MarkupSafe-0.12-py2.7-linux-x86_64-ucs2.egg, > >> /mnt/galaxy/data/galaxy/galaxy-dist/eggs/WebOb-0.8.5-py2.7.egg, > >> /mnt/galaxy/data/galaxy/galaxy-dist/eggs/Routes-1.12.3-py2.7.egg, > >> > /mnt/galaxy/data/galaxy/galaxy-dist/eggs/Cheetah-2.2.2-py2.7-linux-x86_64-ucs2.egg, > >> /mnt/galaxy/data/galaxy/galaxy-dist/eggs/wchartype-0.1-py2.7.egg, > >> > /mnt/galaxy/data/galaxy/galaxy-dist/eggs/elementtree-1.2.6_20050316-py2.7.egg, > >> /mnt/galaxy/data/galaxy/galaxy-dist/eggs/docutils-0.7-py2.7.egg, > >> /mnt/galaxy/data/galaxy/galaxy-dist/eggs/PasteDeploy-1.5.0-py2.7.egg, > >> /mnt/galaxy/data/galaxy/galaxy-dist/eggs/Paste-1.7.5.1-py2.7.egg, > >> /mnt/galaxy/data/galaxy/galaxy-dist/lib, > >> > /mnt/galaxy/data/galaxy/sw/lib/python2.7/site-packages/cutadapt-1.3-py2.7-linux-x86_64.egg, > >> > /mnt/galaxy/data/galaxy/sw/lib/python2.7/site-packages/distribute-0.6.10-py2.7.egg, > >> /mnt/galaxy/data/galaxy/sw/lib/python27.zip, > >> /mnt/galaxy/data/galaxy/sw/lib/python2.7, > >> /mnt/galaxy/data/galaxy/sw/lib/python2.7/plat-linux2, > >> /mnt/galaxy/data/galaxy/sw/lib/python2.7/lib-tk, /mnt/galaxy/da > >> > >> ta/galaxy/sw/lib/python2.7/lib-old, > >> /mnt/galaxy/data/galaxy/sw/lib/python2.7/lib-dynload, > >> /mnt/galaxy/data/galaxy/sw/lib/python2.7/site-packages > >> > >> web0.log > >> 172.17.130.113 - - [01/Aug/2014:17:14:58 -0400] "GET > >> /api/histories/39a249c523d1b262/contents HTTP/1.0" 200 - > >> "http://galaxy.neb.com/root/index"; "Mozilla/5.0 (Macintosh; Intel Mac > OS X > >> 10_9_4) AppleWebKit/537.36 (KHTML, like Gecko) Chr > >> ome/36.0.1985.125 Safari/537.36" > >> 172.17.130.113 - - [01/Aug/2014:17:15:03 -0400] "GET > >> /datasets/49b19822485c7897/display/?preview=True HTTP/1.0" 200 - > >> "http://galaxy.neb.com/root/index"; "Mozilla/5.0 (Macintosh; Intel Mac > OS X > >> 10_9_4) AppleWebKit/537.36 (KHTML, like Ge > >> cko) Chrome/36.0.1985.125 Safari/537.36" > >> 172.17.131.223 - - [01/Aug/2014:17:15:03 -0400] "GET > >> /api/histories/11ff4619ea0fcba9/contents HTTP/1.0" 200 - > >> "http://galaxy.neb.com/"; "Mozilla/5.0 (Macintosh; Intel Mac OS X > 10_9_3) > >> AppleWebKit/537.76.4 (KHTML, like Gecko) Version/7.0 > >> .4 Safari/537.76.4" > >> 172.17.130.113 - - [01/Aug/2014:17:15:04 -0400] "GET > >> /datasets/49b19822485c7897/display/?preview=True HTTP/1.0" 200 - > >> "http://galaxy.neb.com/root/index"; "Mozilla/5.0 (Macintosh; Intel Mac > OS X > >> 10_9_4) AppleWebKit/537.36 (KHTML, like Ge > >> cko) Chrome/36.0.1985.125 Safari/537.36" > >> 172.17.130.113 - - [01/Aug/2014:17:15:07 -0400] "GET > >> /api/histories/39a249c523d1b262/contents HTTP/1.0" 200 - > >> "http://galaxy.neb.com/root/index"; "Mozilla/5.0 (Macintosh; Intel Mac > OS X > >> 10_9_4) AppleWebKit/537.36 (KHTML, like Gecko) Chr > >> ome/36.0.1985.125 Safari/537.36" > >> 172.17.130.113 - - [01/Aug/2014:17:15:09 -0400] "GET > >> /datasets/49b19822485c7897/show_params HTTP/1.0" 200 - > >> "http://galaxy.neb.com/root/index"; "Mozilla/5.0 (Macintosh; Intel Mac > OS X > >> 10_9_4) AppleWebKit/537.36 (KHTML, like Gecko) Chrom > >> e/36.0.1985.125 Safari/537.36" > >> 172.17.130.113 - - [01/Aug/2014:17:15:11 -0400] "GET > >> /api/histories/39a249c523d1b262/contents HTTP/1.0" 200 - > >> "http://galaxy.neb.com/root/index"; "Mozilla/5.0 (Macintosh; Intel Mac > OS X > >> 10_9_4) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/36.0.1985.125 > >> Safari/537.36" > >> 172.17.130.113 - - [01/Aug/2014:17:15:12 -0400] "GET > >> /api/histories/39a249c523d1b262/contents/datasets/49b19822485c7897 > HTTP/1.0" > >> 200 - "http://galaxy.neb.com/root/index"; "Mozilla/5.0 (Macintosh; > Intel Mac > >> OS X 10_9_4) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/36.0.1985.125 > >> Safari/537.36" > >> 172.17.131.223 - - [01/Aug/2014:17:15:12 -0400] "GET > >> /api/histories/11ff4619ea0fcba9/contents HTTP/1.0" 200 - > >> "http://galaxy.neb.com/"; "Mozilla/5.0 (Macintosh; Intel Mac OS X > 10_9_3) > >> AppleWebKit/537.76.4 (KHTML, like Gecko) Version/7.0.4 Safari/537.76.4" > >> 172.17.131.223 - - [01/Aug/2014:17:15:20 -0400] "GET > >> /api/histories/11ff4619ea0fcba9/contents HTTP/1.0" 200 - > >> "http://galaxy.neb.com/"; "Mozilla/5.0 (Macintosh; Intel Mac OS X > 10_9_3) > >> AppleWebKit/537.76.4 (KHTML, like Gecko) Version/7.0.4 Safari/537.76.4" > >> 172.17.131.223 - - [01/Aug/2014:17:15:29 -0400] "GET > >> /api/histories/11ff4619ea0fcba9/contents HTTP/1.0" 200 - > >> "http://galaxy.neb.com/"; "Mozilla/5.0 (Macintosh; Intel Mac OS X > 10_9_3) > >> AppleWebKit/537.76.4 (KHTML, like Gecko) Version/7.0.4 Safari/537.76.4" > >> 172.17.131.223 - - [01/Aug/2014:17:15:37 -0400] "GET > >> /api/histories/11ff4619ea0fcba9/contents HTTP/1.0" 200 - > >> "http://galaxy.neb.com/"; "Mozilla/5.0 (Macintosh; Intel Mac OS X > 10_9_3) > >> AppleWebKit/537.76.4 (KHTML, like Gecko) Version/7.0.4 Safari/537.76.4" > >> 172.17.131.223 - - [01/Aug/2014:17:15:46 -0400] "GET > >> /api/histories/11ff4619ea0fcba9/contents HTTP/1.0" 200 - > >> "http://galaxy.neb.com/"; "Mozilla/5.0 (Macintosh; Intel Mac OS X > 10_9_3) > >> AppleWebKit/537.76.4 (KHTML, like Gecko) Version/7.0.4 Safari/537.76.4" > >> python path is: > >> /mnt/galaxy/data/galaxy/galaxy-dist/eggs/kombu-3.0.12-py2.7.egg, > >> /mnt/galaxy/data/galaxy/galaxy-dist/eggs/anyjson-0.3.3-py2.7.egg, > >> > /mnt/galaxy/data/galaxy/galaxy-dist/eggs/numpy-1.6.0-py2.7-linux-x86_64-ucs2.egg, > >> > /mnt/galaxy/data/galaxy/galaxy-dist/eggs/pysam-0.4.2_kanwei_b10f6e722e9a-py2.7-linux-x86_64-ucs2.egg, > >> > /mnt/galaxy/data/galaxy/galaxy-dist/eggs/mercurial-2.2.3-py2.7-linux-x86_64-ucs2.egg, > >> > /mnt/galaxy/data/galaxy/galaxy-dist/eggs/pycrypto-2.5-py2.7-linux-x86_64-ucs2.egg, > >> > /mnt/galaxy/data/galaxy/galaxy-dist/eggs/python_lzo-1.08_2.03_static-py2.7-linux-x86_64-ucs2.egg, > >> > /mnt/galaxy/data/galaxy/galaxy-dist/eggs/bx_python-0.7.2-py2.7-linux-x86_64-ucs2.egg, > >> /mnt/galaxy/data/galaxy/galaxy-dist/eggs/amqp-1.4.3-py2.7.egg, > >> /mnt/galaxy/data/galaxy/galaxy-dist/eggs/pexpect-2.4-py2.7.egg, > >> > /mnt/galaxy/data/galaxy/galaxy-dist/eggs/SQLAlchemy-0.7.9-py2.7-linux-x86_64-ucs2.egg, > >> /mnt/galaxy/data/galaxy/galaxy-dist/eggs/Babel-1.3-py2.7.egg, > >> /mnt/galaxy/data/galaxy/galaxy-dist/eggs/pytz-2013.9-py2.7.egg, > >> /mnt/galaxy/data/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg, > >> /mnt/galaxy/data/galaxy/galaxy-dist/eggs/WebHelpers-1.3-py2.7.egg, > >> > /mnt/galaxy/data/galaxy/galaxy-dist/eggs/MarkupSafe-0.12-py2.7-linux-x86_64-ucs2.egg, > >> /mnt/galaxy/data/galaxy/galaxy-dist/eggs/WebOb-0.8.5-py2.7.egg, > >> /mnt/galaxy/data/galaxy/galaxy-dist/eggs/Routes-1.12.3-py2.7.egg, > >> > /mnt/galaxy/data/galaxy/galaxy-dist/eggs/Cheetah-2.2.2-py2.7-linux-x86_64-ucs2.egg, > >> /mnt/galaxy/data/galaxy/galaxy-dist/eggs/wchartype-0.1-py2.7.egg, > >> > /mnt/galaxy/data/galaxy/galaxy-dist/eggs/elementtree-1.2.6_20050316-py2.7.egg, > >> /mnt/galaxy/data/galaxy/galaxy-dist/eggs/docutils-0.7-py2.7.egg, > >> /mnt/galaxy/data/galaxy/galaxy-dist/eggs/PasteDeploy-1.5.0-py2.7.egg, > >> /mnt/galaxy/data/galaxy/galaxy-dist/eggs/Paste-1.7.5.1-py2.7.egg, > >> /mnt/galaxy/data/galaxy/galaxy-dist/lib, > >> > /mnt/galaxy/data/galaxy/sw/lib/python2.7/site-packages/cutadapt-1.3-py2.7-linux-x86_64.egg, > >> > /mnt/galaxy/data/galaxy/sw/lib/python2.7/site-packages/distribute-0.6.10-py2.7.egg, > >> /mnt/galaxy/data/galaxy/sw/lib/python27.zip, > >> /mnt/galaxy/data/galaxy/sw/lib/python2.7, > >> /mnt/galaxy/data/galaxy/sw/lib/python2.7/plat-linux2, > >> /mnt/galaxy/data/galaxy/sw/lib/python2.7/lib-tk, > >> /mnt/galaxy/data/galaxy/sw/lib/python2.7/lib-old, > >> /mnt/galaxy/data/galaxy/sw/lib/python2.7/lib-dynload, > >> /mnt/galaxy/data/galaxy/sw/lib/python2.7/site-packages > >> tool_shed.tool_shed_registry DEBUG 2014-08-01 17:16:41,474 Loading > >> references to tool sheds from tool_sheds_conf.xml > >> > >> web1.log > >> > >> 172.17.130.113 - - [01/Aug/2014:17:14:25 -0400] "GET > >> /api/histories/39a249c523d1b262/contents HTTP/1.0" 200 - > >> "http://galaxy.neb.com/root/index"; "Mozilla/5.0 (Macintosh; Intel Mac > OS X > >> 10_9_4) AppleWebKit/537.36 (KHTML, like Gecko) Chr > >> ome/36.0.1985.125 Safari/537.36" > >> 172.17.131.223 - - [01/Aug/2014:17:14:25 -0400] "GET > >> /api/histories/11ff4619ea0fcba9/contents HTTP/1.0" 200 - > >> "http://galaxy.neb.com/"; "Mozilla/5.0 (Macintosh; Intel Mac OS X > 10_9_3) > >> AppleWebKit/537.76.4 (KHTML, like Gecko) Version/7.0 > >> .4 Safari/537.76.4" > >> 172.17.130.113 - - [01/Aug/2014:17:14:29 -0400] "GET > >> /api/histories/39a249c523d1b262/contents HTTP/1.0" 200 - > >> "http://galaxy.neb.com/root/index"; "Mozilla/5.0 (Macintosh; Intel Mac > OS X > >> 10_9_4) AppleWebKit/537.36 (KHTML, like Gecko) Chr > >> ome/36.0.1985.125 Safari/537.36" > >> 172.17.131.223 - - [01/Aug/2014:17:14:34 -0400] "GET > >> /api/histories/11ff4619ea0fcba9/contents HTTP/1.0" 200 - > >> "http://galaxy.neb.com/"; "Mozilla/5.0 (Macintosh; Intel Mac OS X > 10_9_3) > >> AppleWebKit/537.76.4 (KHTML, like Gecko) Version/7.0 > >> .4 Safari/537.76.4" > >> 172.17.130.113 - - [01/Aug/2014:17:14:36 -0400] "GET > >> /datasets/7423d3ce9d139cc4/display/?preview=True HTTP/1.0" 200 - > >> "http://galaxy.neb.com/root/index"; "Mozilla/5.0 (Macintosh; Intel Mac > OS X > >> 10_9_4) AppleWebKit/537.36 (KHTML, like Ge > >> cko) Chrome/36.0.1985.125 Safari/537.36" > >> 172.17.130.113 - - [01/Aug/2014:17:14:37 -0400] "GET > >> /api/histories/39a249c523d1b262/contents HTTP/1.0" 200 - > >> "http://galaxy.neb.com/root/index"; "Mozilla/5.0 (Macintosh; Intel Mac > OS X > >> 10_9_4) AppleWebKit/537.36 (KHTML, like Gecko) Chr > >> ome/36.0.1985.125 Safari/537.36" > >> 172.17.131.223 - - [01/Aug/2014:17:14:42 -0400] "GET > >> /api/histories/11ff4619ea0fcba9/contents HTTP/1.0" 200 - > >> "http://galaxy.neb.com/"; "Mozilla/5.0 (Macintosh; Intel Mac OS X > 10_9_3) > >> AppleWebKit/537.76.4 (KHTML, like Gecko) Version/7.0 > >> .4 Safari/537.76.4" > >> 172.17.130.113 - - [01/Aug/2014:17:14:46 -0400] "GET > >> /api/histories/39a249c523d1b262/contents HTTP/1.0" 200 - > >> "http://galaxy.neb.com/root/index"; "Mozilla/5.0 (Macintosh; Intel Mac > OS X > >> 10_9_4) AppleWebKit/537.36 (KHTML, like Gecko) Chr > >> ome/36.0.1985.125 Safari/537.36" > >> 172.17.130.113 - - [01/Aug/2014:17:14:47 -0400] "GET > >> /datasets/49b19822485c7897/display/?preview=True HTTP/1.0" 200 - > >> "http://galaxy.neb.com/root/index"; "Mozilla/5.0 (Macintosh; Intel Mac > OS X > >> 10_9_4) AppleWebKit/537.36 (KHTML, like Ge > >> cko) Chrome/36.0.1985.125 Safari/537.36" > >> 172.17.130.113 - - [01/Aug/2014:17:14:50 -0400] "GET > >> /api/histories/39a249c523d1b262/contents HTTP/1.0" 200 - > >> "http://galaxy.neb.com/root/index"; "Mozilla/5.0 (Macintosh; Intel Mac > OS X > >> 10_9_4) AppleWebKit/537.36 (KHTML, like Gecko) Chr > >> ome/36.0.1985.125 Safari/537.36" > >> 172.17.131.223 - - [01/Aug/2014:17:14:51 -0400] "GET > >> /api/histories/11ff4619ea0fcba9/contents HTTP/1.0" 200 - > >> "http://galaxy.neb.com/"; "Mozilla/5.0 (Macintosh; Intel Mac OS X > 10_9_3) > >> AppleWebKit/537.76.4 (KHTML, like Gecko) Version/7.0 > >> .4 Safari/537.76.4" > >> 172.17.130.113 - - [01/Aug/2014:17:14:54 -0400] "GET > >> /datasets/49b19822485c7897/display/?preview=True HTTP/1.0" 200 - > >> "http://galaxy.neb.com/root/index"; "Mozilla/5.0 (Macintosh; Intel Mac > OS X > >> 10_9_4) AppleWebKit/537.36 (KHTML, like Ge > >> cko) Chrome/36.0.1985.125 Safari/537.36" > >> 172.17.131.223 - - [01/Aug/2014:17:14:59 -0400] "GET > >> /api/histories/11ff4619ea0fcba9/contents HTTP/1.0" 200 - > >> "http://galaxy.neb.com/"; "Mozilla/5.0 (Macintosh; Intel Mac OS X > 10_9_3) > >> AppleWebKit/537.76.4 (KHTML, like Gecko) Version/7.0 > >> .4 Safari/537.76.4" > >> 172.17.130.113 - - [01/Aug/2014:17:15:02 -0400] "GET > >> /datasets/49b19822485c7897/display/?preview=True HTTP/1.0" 200 - > >> "http://galaxy.neb.com/root/index"; "Mozilla/5.0 (Macintosh; Intel Mac > OS X > >> 10_9_4) AppleWebKit/537.36 (KHTML, like Ge > >> cko) Chrome/36.0.1985.125 Safari/537.36" > >> 172.17.130.113 - - [01/Aug/2014:17:15:03 -0400] "GET > >> /api/histories/39a249c523d1b262/contents HTTP/1.0" 200 - > >> "http://galaxy.neb.com/root/index"; "Mozilla/5.0 (Macintosh; Intel Mac > OS X > >> 10_9_4) AppleWebKit/537.36 (KHTML, like Gecko) Chr > >> ome/36.0.1985.125 Safari/537.36" > >> 172.17.130.113 - - [01/Aug/2014:17:15:04 -0400] "GET > >> /datasets/49b19822485c7897/show_params HTTP/1.0" 200 - > >> "http://galaxy.neb.com/root/index"; "Mozilla/5.0 (Macintosh; Intel Mac > OS X > >> 10_9_4) AppleWebKit/537.36 (KHTML, like Gecko) Chrom > >> e/36.0.1985.125 Safari/537.36" > >> 172.17.130.113 - - [01/Aug/2014:17:15:07 -0400] "GET > >> /datasets/49b19822485c7897/display/?preview=True HTTP/1.0" 200 - > >> "http://galaxy.neb.com/root/index"; "Mozilla/5.0 (Macintosh; Intel Mac > OS X > >> 10_9_4) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/36.0.1985.125 > >> Safari/537.36" > >> 172.17.131.223 - - [01/Aug/2014:17:15:08 -0400] "GET > >> /api/histories/11ff4619ea0fcba9/contents HTTP/1.0" 200 - > >> "http://galaxy.neb.com/"; "Mozilla/5.0 (Macintosh; Intel Mac OS X > 10_9_3) > >> AppleWebKit/537.76.4 (KHTML, like Gecko) Version/7.0.4 Safari/537.76.4" > >> 172.17.130.113 - - [01/Aug/2014:17:15:10 -0400] "GET > >> /datasets/49b19822485c7897/display/?preview=True HTTP/1.0" 200 - > >> "http://galaxy.neb.com/root/index"; "Mozilla/5.0 (Macintosh; Intel Mac > OS X > >> 10_9_4) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/36.0.1985.125 > >> Safari/537.36" > >> 172.17.130.113 - - [01/Aug/2014:17:15:11 -0400] "GET > >> /datasets/49b19822485c7897/show_params HTTP/1.0" 200 - > >> "http://galaxy.neb.com/root/index"; "Mozilla/5.0 (Macintosh; Intel Mac > OS X > >> 10_9_4) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/36.0.1985.125 > >> Safari/537.36" > >> 172.17.130.113 - - [01/Aug/2014:17:15:12 -0400] "GET > >> /api/histories/39a249c523d1b262 HTTP/1.0" 200 - > >> "http://galaxy.neb.com/root/index"; "Mozilla/5.0 (Macintosh; Intel Mac > OS X > >> 10_9_4) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/36.0.1985.125 > >> Safari/537.36" > >> 172.17.130.113 - - [01/Aug/2014:17:15:15 -0400] "GET > >> /dataset/errors?id=49b19822485c7897 HTTP/1.0" 200 - > >> "http://galaxy.neb.com/root/index"; "Mozilla/5.0 (Macintosh; Intel Mac > OS X > >> 10_9_4) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/36.0.1985.125 > >> Safari/537.36" > >> -- > >> Bradley W. Langhorst, Ph.D. > >> Applications and Product Development Scientist > >> > >> On Aug 5, 2014, at 5:18 PM, Dannon Baker <dannon.ba...@gmail.com> > wrote: > >> > >> Definitely looks like an encoded id is being used in the query when it > >> should be an unencoded id. I can try to dig through the query and make > >> guesses as to what's calling it, but do you have any hints at all what's > >> happening in galaxy at the time of this request? > >> > >> -Dannon > >> > >> > >> On Tue, Aug 5, 2014 at 5:13 PM, Langhorst, Brad <langho...@neb.com> > wrote: > >>> > >>> I see this in my database server logs… > >>> > >>> SELECT history_dataset_association.id AS > history_dataset_association_id, > >>> history_dataset_association.history_id AS > >>> history_dataset_association_history_id, > >>> history_dataset_association.dataset_id AS > >>> history_dataset_association_dataset_id, > >>> history_dataset_association.create_time AS > >>> history_dataset_association_create_time, > >>> history_dataset_association.update_time AS > >>> history_dataset_association_update_time, > history_dataset_association.state > >>> AS history_dataset_association_state, > >>> history_dataset_association.copied_from_history_dataset_association_id > AS > >>> history_dataset_association_copied_from_history_dataset_a_1, > >>> > history_dataset_association.copied_from_library_dataset_dataset_association_id > >>> AS history_dataset_association_copied_from_library_dataset_d_2, > >>> history_dataset_association.hid AS history_dataset_association_hid, > >>> history_dataset_association.name AS history_dataset_association_name, > >>> history_dataset_association.info AS history_dataset_association_info, > >>> history_dataset_association.blurb AS history_dataset_association_blurb, > >>> history_dataset_association.peek AS history_dataset_association_peek, > >>> history_dataset_association.tool_version AS > >>> history_dataset_association_tool_version, > >>> history_dataset_association.extension AS > >>> history_dataset_association_extension, > history_dataset_association.metadata > >>> AS history_dataset_association_metadata, > >>> history_dataset_association.parent_id AS > >>> history_dataset_association_parent_id, > >>> history_dataset_association.designation AS > >>> history_dataset_association_designation, > history_dataset_association.deleted > >>> AS history_dataset_association_deleted, > history_dataset_association.purged > >>> AS history_dataset_association_purged, > history_dataset_association.visible > >>> AS history_dataset_association_visible, > >>> history_dataset_association.hidden_beneath_collection_instance_id AS > >>> history_dataset_association_hidden_beneath_collection_ins_3, > >>> history_dataset_association.extended_metadata_id AS > >>> history_dataset_association_extended_metadata_id, dataset_1.id AS > >>> dataset_1_id, dataset_1.create_time AS dataset_1_create_time, > >>> dataset_1.update_time AS dataset_1_update_time, dataset_1.state AS > >>> dataset_1_state, dataset_1.deleted AS dataset_1_deleted, > dataset_1.purged AS > >>> dataset_1_purged, dataset_1.purgable AS dataset_1_purgable, > >>> dataset_1.object_store_id AS dataset_1_object_store_id, > >>> dataset_1.external_filename AS dataset_1_external_filename, > >>> dataset_1._extra_files_path AS dataset_1__extra_files_path, > >>> dataset_1.file_size AS dataset_1_file_size, dataset_1.total_size AS > >>> dataset_1_total_size, dataset_1.uuid AS dataset_1_uuid > >>> FROM history_dataset_association LEFT OUTER JOIN dataset AS dataset_1 > ON > >>> dataset_1.id = history_dataset_association.dataset_id > >>> WHERE history_dataset_association.id = ‘49b19822485c7897' > >>> > >>> looks like a simple bug to me. > >>> > >>> > >>> But I don’t know an easy way to track it down. > >>> > >>> Any ideas? > >>> > >>> Brad > >>> > >>> -- > >>> Bradley W. Langhorst, Ph.D. > >>> Applications and Product Development Scientist > >>> > >>> > >>> ___________________________________________________________ > >>> Please keep all replies on the list by using "reply all" > >>> in your mail client. To manage your subscriptions to this > >>> and other Galaxy lists, please use the interface at: > >>> http://lists.bx.psu.edu/ > >>> > >>> To search Galaxy mailing lists use the unified search at: > >>> http://galaxyproject.org/search/mailinglists/ > >> > >> > >> > > > > > > > > ___________________________________________________________ > > Please keep all replies on the list by using "reply all" > > in your mail client. To manage your subscriptions to this > > and other Galaxy lists, please use the interface at: > > http://lists.bx.psu.edu/ > > > > To search Galaxy mailing lists use the unified search at: > > http://galaxyproject.org/search/mailinglists/ >
___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
