Mira doesn’t work on Galaxy. This is the log message I receive.
Tool: Assemble with MIRA v3.4
Name:   MIRA log
Created:        Fri Aug 22 00:24:38 2014 (UTC)
Filesize:       0 bytes
Dbkey:  ?
Format: txt
Galaxy Tool Version:    0.0.10
Tool Version:   None
Tool Standard Output:   
Tool Standard Error:    
Tool Exit Code: None
API ID: d5f55b83db1f410a
Full Path:      /mnt/galaxy/files/000/dataset_326.dat

Input Parameter Value   Note for rerun
Assembly method         De novo
Assembly type   Genome
Assembly quality grade  Accurate
Backbones/reference chromosomes?        false
Sanger/Capillary reads?         false
454 reads?      false
Solexa/Illumina reads?  false
Ion Torrent reads?      true
Ion Torrent reads file  10: 
Inheritance Chain
MIRA log

Also I can’t install Mira 4. This is the message I receive. Any suggestions.


Marija Tauschek

Dr Marija Tauschek/Atanaskovic
Robins-Browne Lab
Dept Microbiology & Immunology,
The University of Melbourne,
at the Peter Doherty Institute for Infection and Immunity,
Victoria 3010, Australia
Tel: +61 3 8344 9927
Email: ma...@unimelb.edu.au
Internal Server Error
Galaxy was unable to successfully complete your request

Module galaxy.web.framework.middleware.error:149 in __call__
>> <>
>>  app_iter = self.application(environ, sr_checker)
Module paste.recursive:84 in __call__
>> <>
>>  return self.application(environ, start_response)
Module paste.httpexceptions:633 in __call__
>> <>
>>  return self.application(environ, start_response)
Module galaxy.web.framework.base:132 in __call__
>> <>
>>  return self.handle_request( environ, start_response )
Module galaxy.web.framework.base:190 in handle_request
>> <>
>>  body = method( trans, **kwargs )
Module galaxy.web.framework:369 in decorator
>> <>
>>  return func( self, trans, *args, **kwargs )
Module galaxy.webapps.galaxy.controllers.admin_toolshed:983 in 
>> <>
>>  includes_tool_dependencies )
Module tool_shed.util.common_install_util:97 in get_dependencies_for_repository
>> <>
>>  repository = suc.get_repository_for_dependency_relationship( trans.app, 
>> tool_shed_url, name, repository_owner, changeset_revision )
Module tool_shed.util.shed_util_common:1036 in 
>> <>
>>  ( name, owner, changeset_revision ) )
Module tool_shed.util.shed_util_common:1867 in url_join
>> <>
>>  parts.append( arg.strip( '/' ) )
AttributeError: 'NoneType' object has no attribute 'strip'



This may be an intermittent problem due to load or other unpredictable factors, 
reloading the page may address the problem.

Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:

To search Galaxy mailing lists use the unified search at:

Reply via email to