I do not use "new_file_path" and "collect_outputs_from" in
universe_wsgi.ini



In my tool code I directly save to files to:

$__new_file_path__/primary_<id>_somename_visible_filetype



As they say on the page:

To use this method at least one output dataset (output1 in our
example) must be specified - this dataset will act as the
reference for our additional datasets. The new additional
datasets must be placed in the directory provided by
$__new_file_path__ and named in the form: "%s_%s_%s_%s_%s_%s" %
( 'primary', output1.id, name, 'visible', file_type,
dbkey(build) ) Where the '_dbkey' portion of the name is
optional.



Stef





----- Original message -----

From: Martin Christiansen <[1]martinchristianse...@hotmail.com>

To: Stef van Lieshout <[2]stefvanliesh...@fastmail.fm>,
"[3]galaxy-dev@lists.bx.psu.edu"
<[4]galaxy-dev@lists.bx.psu.edu>

Subject: RE: [galaxy-dev] Multiple output datasets

Date: Wed, 27 Aug 2014 14:01:03 +0200



Hi Stef,

I always restart galaxy and have done the other parts correct
as well, but with no luck.

In my universe_wsgi.ini file I have:

new_file_path = my/file/path
collect_outputs_from = new_file_path, job_working_directory

Does this look familiar?

Martin
  __________________________________________________________

From: stefvanliesh...@fastmail.fm
To: galaxy-dev@lists.bx.psu.edu
Date: Wed, 27 Aug 2014 12:22:35 +0200
Subject: Re: [galaxy-dev] Multiple output datasets

It does works for me if I do exactly as described on that page
without using the universe_wsgi.ini option:

- I have the "force_history_refresh"
- I follow the exact file-name structure
(primary_<id>_somename_visible_filetype)
- I save the files in the dir from passed param
$__new_file_path__

Can you check if that works? Maybe the change in
universe_wsgi.ini isn't picked up correctly... Did you restart
galaxy?

Stef


----- Original message -----
From: Martin Christiansen <[5]martinchristianse...@hotmail.com>
To: "[6]galaxy-dev@lists.bx.psu.edu"
<[7]galaxy-dev@lists.bx.psu.edu>
Subject: [galaxy-dev] Multiple output datasets
Date: Wed, 27 Aug 2014 12:04:46 +0200

Hi all,

I'm implementing a tool for our local galaxy instance which has
multiple output datasets.
The number of datasets are determined by the input so I've been
following the instructions at the bottom of this page:
[8]https://wiki.galaxyproject.org/Admin/Tools/Multiple%20Output
%20Files.

As I understand, the $__new_file_path__ option is changed in
theuniverse_wsgi.ini file.
Regardless, the extra files created from the tool does not show
in the galaxy history.

Any ideas?

Best,
Martin Christiansen
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References

1. mailto:martinchristianse...@hotmail.com
2. mailto:stefvanliesh...@fastmail.fm
3. mailto:galaxy-dev@lists.bx.psu.edu
4. mailto:galaxy-dev@lists.bx.psu.edu
5. mailto:martinchristianse...@hotmail.com
6. mailto:galaxy-dev@lists.bx.psu.edu
7. mailto:galaxy-dev@lists.bx.psu.edu
8. https://wiki.galaxyproject.org/Admin/Tools/Multiple%20Output%20Files.
9. http://lists.bx.psu.edu/
  10. http://galaxyproject.org/search/mailinglists/
___________________________________________________________
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