After public debate on Trello, there have been a couple tools that
have indeed disappeared completely but nearly all tools that have gone
away have been migrated to the tool shed and can be recovered with the
migration scripts that are included with each new release
Are you running those scripts and still having those problems or were
you not aware of these scripts?
My understanding is that if you are running these scripts workflows
and tool re-runs should continue to work. (Am I wrong about this?).
If particular tools don't disappear but no longer work - this sounds
like a bug and you should let the list or Trello know so that the
devteam can attempt to fix the problem or at least be aware it exists.
Hopefully at some point soon nearly all of the tools will be
migrated out the core release and the devteam will provide some
mechanism to quickly deploy complete say NGS packages all at once to
new releases. Once everything is in the tool shed then hopefully these
problems will go away. (There will be new problems of course - but
hopefully updates will easier).
On Tue, Sep 9, 2014 at 5:49 AM, Thomas Bellembois
> I try to keep our Galaxy instance up to date.
> Very often, some tools disappear and other do not work anymore. This
> breaks some users workflows.
> I may miss something. Is there a "best update pratice" to keep a Galaxy
> instance and the tool-sheds fully functionnal ?
> Thomas Bellembois, Network and System Administrator, IGFL (France)
> http://perso.ens-lyon.fr/thomas.bellembois - +33 4 26 73 13 67
> (IGFL internal IT doc: http://itdoc.igfl.ens-lyon.fr/itdoc)
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