Hey Ashish,

We have an open issue to sort out exactly why/how this happens, but a quick
fix for many users is just to remove your eggs/ folder and all eggs and
re-run `python scripts/fetch_eggs.py`.  Give that a shot, but do let me
know if it doesn't' work.


On Wed, Sep 10, 2014 at 4:54 PM, ashish damania <ashis...@hotmail.com>
wrote:

> # sh run.sh
> Some eggs are out of date, attempting to fetch...Warning: setuptools (a 
> dependent egg of sqlalchemy-migrate) cannot be fetchedWarning: simplejson (a 
> dependent egg of bioblend) cannot be fetchedsimplejson 2.1.1 couldn't be 
> downloaded automatically. You can trybuilding it by hand with: python 
> scripts/scramble.py -e simplejsonFetch failed.Traceback (most recent call 
> last): File 
> "/usr/home/ec2-user/galaxy-dist/lib/galaxy/webapps/galaxy/buildapp.py", line 
> 38, in app_factory from galaxy.app import UniverseApplication File 
> "/usr/home/ec2-user/galaxy-dist/lib/galaxy/app.py", line 12, in <module> from 
> galaxy.visualization.data_providers.registry import DataProviderRegistry File 
> "/usr/home/ec2-user/galaxy-dist/lib/galaxy/visualization/data_providers/registry.py",
>  line 2, in <module> from galaxy.visualization.data_providers import genome 
> File 
> "/usr/home/ec2-user/galaxy-dist/lib/galaxy/visualization/data_providers/genome.py",
>  line 17, in <module> from pysam import !
> csamtools, ctabix File 
> "/usr/home/ec2-user/galaxy-dist/eggs/pysam-0.4.2_kanwei_b10f6e722e9a-py2.7-freebsd-10.0-RELEASE-p7-amd64-ucs2.egg/pysam/__init__.py",
>  line 1, in <module> from csamtools import *ImportError: 
> /usr/home/ec2-user/galaxy-dist/eggs/pysam-0.4.2_kanwei_b10f6e722e9a-py2.7-freebsd-10.0-RELEASE-p7-amd64-ucs2.egg/csamtools.so:
>  Undefined symbol "__ks_insertsort_heap"
>
> So I have tried running this script
> python scripts/scramble.py -e simplejson
> ‚Äč
> Traceback (most recent call last): File "scripts/scramble.py", line 50, in 
> <module> egg.scramble() File 
> "/usr/home/ec2-user/galaxy-dist/lib/galaxy/eggs/scramble.py", line 60, in 
> scramble raise ScrambleFailure( self, "%s(): Egg build for %s did not appear 
> to fail, but no egg found to copy from expected path:\n %s" % ( 
> sys._getframe().f_code.co_name, self.name, new_egg ) 
> )galaxy.eggs.scramble.ScrambleFailure: scramble(): Egg build for simplejson 
> did not appear to fail, but no egg found to copy from expected path: 
> /usr/home/ec2-user/galaxy-dist/scripts/scramble/build/py2.7/simplejson/dist/simplejson-2.1.1-py2.7.egg
>
>
> I found that I have file named: 
> "simplejson-2.1.1-py2.7-freebsd-10.0-RELEASE-p7-amd64-ucs2.egg" in the 
> "../scripts/scramble/build/py2.7/simplejson/dist/" folder. I renamed that 
> file simplejson-2.1.1-py2.7.egg but it gives me that same error when I 
> execute "sh run.sh".
>
>
> Is it ok to run Galaxy under Freebsd 10.0? Are there any compatibility issues?
>
> Thanks you.
>
>
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