Dear all

For each bam file in my history I can download the associated bai (bam 
index) file.

I assume these files are stored somewhere under 
/mount/galaxy/database/files/_metadata_files. Correct? Is there an easy 
way to find the bam index file for a bam file, given only the internal 
file name of the bam (e.g. 

I am asking because I would like to use the files_to_ftp tool to 
automatically download bams together with their associated indices.


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