when I use the example_watch_folder.py to check for files in an input
directory and process them if they are present. The workflow runs to completion
successfully, but the "example_watch_folder.py" task crashes with the following
errors, thus it can only process one file at a time, as the
example_watch_folder.py has to be constantly restarted.
python example_watch_folder.py d2fcd3feb4c6318c496d55fa8869b67c
http://barium-rbh/new/api/ /home/galaxy/cte_input /home/galaxy/cte_output "API
submit library_id [f2db41e1fa331b3e]
u'82b264d8c3d11790', u'name': u'141_S_0851_MRI_T1_Screening.nii.gz'}]]
waits for several minutes ....
Traceback (most recent call last):
File "example_watch_folder.py", line 97, in <module>
main(api_key, api_url, in_folder, out_folder, data_library, workflow )
File "example_watch_folder.py", line 77, in main
res = submit( api_key, api_url + 'workflows', wf_data,
File "common.py", line 117, in submit
r = post( api_key, url, data )
File "common.py", line 51, in post
return json.loads( urllib2.urlopen( req ).read() )
File "/usr/lib/python2.7/socket.py", line 351, in read
data = self._sock.recv(rbufsize)
File "/usr/lib/python2.7/httplib.py", line 541, in read
File "/usr/lib/python2.7/httplib.py", line 586, in _read_chunked
httplib.IncompleteRead: IncompleteRead(176 bytes read)
Due to the crash there is no outputs shown on the screen. Any ideas?
p.s. there is nothing in the log file.
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