Darnit, I should have tried downloading again before sending the email - that 
solved the issue. 

Newest version of upload.py doesn't make use of from_json_string



 From: Robert Davidson <bobbledavid...@yahoo.co.uk>
To: "galaxy-dev@lists.bx.psu.edu" <galaxy-dev@lists.bx.psu.edu> 
Sent: Monday, 3 November 2014, 15:33
Subject: Problems with upload.py and changes to json.py 

Dear Galaxy-Dev,

Last week I downloaded a fresh version of Galaxy with all stable updates. I've 
just come across a NameError in the upload.py tool. 

Traceback (most recent call last):
  File "/home/rob/galaxy-dist/tools/data_source/upload.py", line 390, in 
  File "/home/rob/galaxy-dist/tools/data_source/upload.py", line 368, in 
    dataset = from_json_string( line )
NameError: global name 'from_json_string' is not defined

A quick investigation led me to:
 from galaxy.util.json import *
and from there to json.py. I compared this file with my previous version and 
note that there are quite a few changes. 

The problem seems to be that from_json_string() is not included in the __all__ 
list of public functions... can someone tell me if this is a bug/oversight or 
if I'm missing something?


Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:

To search Galaxy mailing lists use the unified search at:

Reply via email to