Well there is at least one person using this functionality -
http://dev.list.galaxyproject.org/Problem-to-upload-data-to-Galaxy-when-using-pbed-file-format-td4666000.html.

Just to make this more concrete - Sam has swapped the "upload file"
button to use the new upload widget this release cycle (targeted for
December 1st). So barring negative feedback - uploading pbed or velvet
report datatypes (or other similar composite datatypes) will no longer
be possible via the GUI.

-John

On Thu, Aug 14, 2014 at 2:32 PM, Aysam Guerler <aysam.guer...@gmail.com> wrote:
> Hello everyone,
>
> We are considering to disable the deprecated upload tool form which is
> currently accessible through Tool panel > Get Data > Upload file. The new
> upload feature (icon at the top of the Tool panel) covers all of its
> functionality except uploading composite datatypes like e.g. Velvet.
>
> Please let us know if you are using the composite file upload functionality
> of the former tool form.
>
> Thanks,
> Sam
>
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