Hello,
I am a new Galaxy learner. I try to master data managers. I have tried to
create sacCer2 reference genome following instruction on video
http://vimeo.com/74265510. In Data Manager History, it gives a following
error:
Traceback (most recent call last):
File "/home/uladzimir/shed_tools/
toolshed.g2.bx.psu.edu/repos/devteam/data_manager_fetch_genome_all_fasta/2ebc856bce29/data_manager_fetch_genome_all_fasta/data_manager/data_manager_fetch_genome_all_fasta.py",
line 350, in <module>
if __name__ == "__main__": main()
File "/home/uladzimir/shed_tools/
toolshed.g2.bx.psu.edu/repos/devteam/data_manager_fetch_genome_all_fasta/2ebc856bce29/data_manager_fetch_genome_all_fasta/data_manager/data_manager_fetch_genome_all_fasta.py",
line 345, in main
REFERENCE_SOURCE_TO_DOWNLOAD[
params['param_dict']['reference_source']['reference_source_selector'] ](
data_manager_dict, params, target_directory, dbkey, sequence_id,
sequence_name )
File "/home/uladzimir/shed_tools/
toolshed.g2.bx.psu.edu/repos/devteam/data_manager_fetch_genome_all_fasta/2ebc856bce29/data_manager_fetch_genome_all_fasta/data_manager/data_manager_fetch_genome_all_fasta.py",
line 182, in download_from_ucsc
ftp = FTP( UCSC_FTP_SERVER )
File "/usr/lib/python2.7/ftplib.py", line 120, in __init__
self.connect(host)
File "/usr/lib/python2.7/ftplib.py", line 135, in connect
self.sock = socket.create_connection((self.host, self.port),
self.timeout)
File "/usr/lib/python2.7/socket.py", line 571, in create_connection
raise err
socket.error: [Errno 110] Connection timed out
Can you please help me?
Thanks
Uladzimir
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