Hi again,
I have just updated Picard, and am getting a similar error with some tools
from that repository when I switch to older version from tool page.
I also noticed that some tools from the Picard repo appear as multiple
entries for different in the tool panel rather than selecting the different
versions from the drop down.
These errors are all on tools with version dropdowns, however I don't get
these errors on all of the version dropdowns, for instance I can switch to
an older version of fastqc no problem.
So are the new versions of tools breaking old versions, or is there a
problem with the tool panel?

Any help appreciated!!


SamToFastq:
URL: http://....../tool_runner/index
File
'/home/galaxy/galaxy-dist/eggs/WebError-0.8a-py2.6.egg/weberror/evalexception/middleware.py',
line 364 in respond
  app_iter = self.application(environ, detect_start_response)
File
'/home/galaxy/galaxy-dist/eggs/Paste-1.7.5.1-py2.6.egg/paste/recursive.py',
line 84 in __call__
  return self.application(environ, start_response)
File
'/home/galaxy/galaxy-dist/lib/galaxy/web/framework/middleware/remoteuser.py',
line 107 in __call__
  return self.app( environ, start_response )
File
'/home/galaxy/galaxy-dist/eggs/Paste-1.7.5.1-py2.6.egg/paste/httpexceptions.py',
line 633 in __call__
  return self.application(environ, start_response)
File '/home/galaxy/galaxy-dist/lib/galaxy/web/framework/base.py', line 132
in __call__
  return self.handle_request( environ, start_response )
File '/home/galaxy/galaxy-dist/lib/galaxy/web/framework/base.py', line 190
in handle_request
  body = method( trans, **kwargs )
File
'/home/galaxy/galaxy-dist/lib/galaxy/webapps/galaxy/controllers/tool_runner.py',
line 90 in index
  template, vars = tool.handle_input( trans, params.__dict__ )
File '/home/galaxy/galaxy-dist/lib/galaxy/tools/__init__.py', line 2136 in
handle_input
  errors, params = self.__check_param_values( trans, expanded_incoming,
expanded_state, old_errors, process_state, history=history, source=source )
File '/home/galaxy/galaxy-dist/lib/galaxy/tools/__init__.py', line 2251 in
__check_param_values
  errors = self.update_state( trans, inputs, state.inputs, incoming,
old_errors=old_errors or {}, source=source )
File '/home/galaxy/galaxy-dist/lib/galaxy/tools/__init__.py', line 2514 in
update_state
  group_state = state[input.name]
KeyError: 'single_paired_end_type'


ReorderSam:
URL: http://....../tool_runner/index
File
'/home/galaxy/galaxy-dist/eggs/WebError-0.8a-py2.6.egg/weberror/evalexception/middleware.py',
line 364 in respond
  app_iter = self.application(environ, detect_start_response)
File
'/home/galaxy/galaxy-dist/eggs/Paste-1.7.5.1-py2.6.egg/paste/recursive.py',
line 84 in __call__
  return self.application(environ, start_response)
File
'/home/galaxy/galaxy-dist/lib/galaxy/web/framework/middleware/remoteuser.py',
line 107 in __call__
  return self.app( environ, start_response )
File
'/home/galaxy/galaxy-dist/eggs/Paste-1.7.5.1-py2.6.egg/paste/httpexceptions.py',
line 633 in __call__
  return self.application(environ, start_response)
File '/home/galaxy/galaxy-dist/lib/galaxy/web/framework/base.py', line 132
in __call__
  return self.handle_request( environ, start_response )
File '/home/galaxy/galaxy-dist/lib/galaxy/web/framework/base.py', line 190
in handle_request
  body = method( trans, **kwargs )
File
'/home/galaxy/galaxy-dist/lib/galaxy/webapps/galaxy/controllers/tool_runner.py',
line 90 in index
  template, vars = tool.handle_input( trans, params.__dict__ )
File '/home/galaxy/galaxy-dist/lib/galaxy/tools/__init__.py', line 2136 in
handle_input
  errors, params = self.__check_param_values( trans, expanded_incoming,
expanded_state, old_errors, process_state, history=history, source=source )
File '/home/galaxy/galaxy-dist/lib/galaxy/tools/__init__.py', line 2251 in
__check_param_values
  errors = self.update_state( trans, inputs, state.inputs, incoming,
old_errors=old_errors or {}, source=source )
File '/home/galaxy/galaxy-dist/lib/galaxy/tools/__init__.py', line 2514 in
update_state
  group_state = state[input.name]
KeyError: 'source'

FastqToSam:
URL: http://...../tool_runner/index
File
'/home/galaxy/galaxy-dist/eggs/WebError-0.8a-py2.6.egg/weberror/evalexception/middleware.py',
line 364 in respond
  app_iter = self.application(environ, detect_start_response)
File
'/home/galaxy/galaxy-dist/eggs/Paste-1.7.5.1-py2.6.egg/paste/recursive.py',
line 84 in __call__
  return self.application(environ, start_response)
File
'/home/galaxy/galaxy-dist/lib/galaxy/web/framework/middleware/remoteuser.py',
line 107 in __call__
  return self.app( environ, start_response )
File
'/home/galaxy/galaxy-dist/eggs/Paste-1.7.5.1-py2.6.egg/paste/httpexceptions.py',
line 633 in __call__
  return self.application(environ, start_response)
File '/home/galaxy/galaxy-dist/lib/galaxy/web/framework/base.py', line 132
in __call__
  return self.handle_request( environ, start_response )
File '/home/galaxy/galaxy-dist/lib/galaxy/web/framework/base.py', line 190
in handle_request
  body = method( trans, **kwargs )
File
'/home/galaxy/galaxy-dist/lib/galaxy/webapps/galaxy/controllers/tool_runner.py',
line 90 in index
  template, vars = tool.handle_input( trans, params.__dict__ )
File '/home/galaxy/galaxy-dist/lib/galaxy/tools/__init__.py', line 2136 in
handle_input
  errors, params = self.__check_param_values( trans, expanded_incoming,
expanded_state, old_errors, process_state, history=history, source=source )
File '/home/galaxy/galaxy-dist/lib/galaxy/tools/__init__.py', line 2251 in
__check_param_values
  errors = self.update_state( trans, inputs, state.inputs, incoming,
old_errors=old_errors or {}, source=source )
File '/home/galaxy/galaxy-dist/lib/galaxy/tools/__init__.py', line 2514 in
update_state
  group_state = state[input.name]
KeyError: 'param_type'




On 18 December 2014 at 01:12, Anna Terry <iseegl...@googlemail.com> wrote:
>
> Hi,
> I am getting an error page when I try to open the bowtie2 tool page (after
> selecting older version 0.2 a54de7e658f7 from drop down on version 0.3
> c1ec08cb34f9 page).
>
> URL: http://....../tool_runner/index
> File
> '/home/galaxy/galaxy-dist/eggs/WebError-0.8a-py2.6.egg/weberror/evalexception/middleware.py',
> line 364 in respond
>   app_iter = self.application(environ, detect_start_response)
> File
> '/home/galaxy/galaxy-dist/eggs/Paste-1.7.5.1-py2.6.egg/paste/recursive.py',
> line 84 in __call__
>   return self.application(environ, start_response)
> File
> '/home/galaxy/galaxy-dist/lib/galaxy/web/framework/middleware/remoteuser.py',
> line 107 in __call__
>   return self.app( environ, start_response )
> File
> '/home/galaxy/galaxy-dist/eggs/Paste-1.7.5.1-py2.6.egg/paste/httpexceptions.py',
> line 633 in __call__
>   return self.application(environ, start_response)
> File '/home/galaxy/galaxy-dist/lib/galaxy/web/framework/base.py', line 132
> in __call__
>   return self.handle_request( environ, start_response )
> File '/home/galaxy/galaxy-dist/lib/galaxy/web/framework/base.py', line 190
> in handle_request
>   body = method( trans, **kwargs )
> File
> '/home/galaxy/galaxy-dist/lib/galaxy/webapps/galaxy/controllers/tool_runner.py',
> line 90 in index
>   template, vars = tool.handle_input( trans, params.__dict__ )
> File '/home/galaxy/galaxy-dist/lib/galaxy/tools/__init__.py', line 2136 in
> handle_input
>   errors, params = self.__check_param_values( trans, expanded_incoming,
> expanded_state, old_errors, process_state, history=history, source=source )
> File '/home/galaxy/galaxy-dist/lib/galaxy/tools/__init__.py', line 2251 in
> __check_param_values
>   errors = self.update_state( trans, inputs, state.inputs, incoming,
> old_errors=old_errors or {}, source=source )
> File '/home/galaxy/galaxy-dist/lib/galaxy/tools/__init__.py', line 2514 in
> update_state
>   group_state = state[input.name]
> KeyError: 'params'
>
> I can't see anything that gives me a clue where to investigate further,
> hopefully someone here knows?
> I have tried updating to latest changeset, and have restarted a few times,
> but still the same error.
>
> Thanks in advance for help
> Anna
>
>
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