I get this error occasionally: "/bin/sh: 1: /opt/galaxy/web/database/job_working_directory/000/100/galaxy_100.sh: Text file busy"
When this occurs, the step fails outright. Resubmitting the step resolves the issue and things run no problem. If this error appears early in a long workflow, I have to manually resubmit ALL dependent steps... what a pain! Perhaps this is something the Galaxy job scheduler can look out for, flush() the system, sleep() a second or two to let the file write and close, and then rerun. A more fault-tolerant way of running workflows without unnecessary human intervention. Cheers, -Evan Bollig Research Associate | Application Developer | User Support Consultant Minnesota Supercomputing Institute 599 Walter Library 612 624 1447 [email protected] [email protected] ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
