I get this error occasionally:

"/bin/sh: 1: 
/opt/galaxy/web/database/job_working_directory/000/100/galaxy_100.sh:
Text file busy"

When this occurs, the step fails outright. Resubmitting the step
resolves the issue and things run no problem. If this error appears
early in a long workflow, I have to manually resubmit ALL dependent
steps... what a pain!

Perhaps this is something the Galaxy job scheduler can look out for,
flush() the system, sleep() a second or two to let the file write and
close, and then rerun. A more fault-tolerant way of running workflows
without unnecessary human intervention.

Cheers,
-Evan Bollig
Research Associate | Application Developer | User Support Consultant
Minnesota Supercomputing Institute
599 Walter Library
612 624 1447
e...@msi.umn.edu
boll0...@umn.edu
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