Peter,

After fixing a number of issues, it appears that the tests are now running as they should. I'll keep an eye on the test framework in case any new errors crop up.

   --Dave B.

On 12/10/2014 09:19 AM, Peter Cock wrote:
On Wed, Dec 10, 2014 at 2:03 PM, John Chilton <jmchil...@gmail.com> wrote:
On Wed, Dec 10, 2014 at 5:46 AM, Peter Cock <p.j.a.c...@googlemail.com> wrote:
Hi guys,

The good news is my list of failing tools has shrunk to the following,
none of which seem to have been tested yet in December, stuck
with "Exception: Job in error state.":

https://testtoolshed.g2.bx.psu.edu/view/peterjc/blast2go
https://testtoolshed.g2.bx.psu.edu/view/peterjc/blastxml_to_top_descr
https://testtoolshed.g2.bx.psu.edu/view/peterjc/clinod
https://testtoolshed.g2.bx.psu.edu/view/peterjc/mira_assembler
https://testtoolshed.g2.bx.psu.edu/view/peterjc/nlstradamus

Meanwhile, on the main tool,  "Exception: Job in error state."
and not yet tested in December:

https://toolshed.g2.bx.psu.edu/view/peterjc/blast2go

It would be nice to have a more informative error here...

Ugh - yes it clearly would - very sorry about that.

https://trello.com/c/BZUaMnJB


Have these tools been automatically earmarked not to be retested?
Note that some tools have been tested earlier this month:

I also have a legitimate failure for missing tests, run 2014-12-09,
https://testtoolshed.g2.bx.psu.edu/view/peterjc/ncbi_blast_plus


Interesting... some tests did run though? Does the framework not
report passing tests - seems like it would be hard to know if it
working in that case.

The "Latest revision: all tool tests pass" search returns lots of
repositories, but I must examine each one-by-one to see when
the tests were last run. The sample I just checked on the main
Tool Shed were all lasted tested 2014-11-23,

https://toolshed.g2.bx.psu.edu/view/peterjc/align_back_trans
https://toolshed.g2.bx.psu.edu/view/peterjc/blast_rbh
https://toolshed.g2.bx.psu.edu/view/peterjc/blastxml_to_top_descr
https://toolshed.g2.bx.psu.edu/view/peterjc/clinod
https://toolshed.g2.bx.psu.edu/view/peterjc/seq_select_by_id

However at least some tests have been run in December, e.g.
https://toolshed.g2.bx.psu.edu/view/devteam/ncbi_blast_plus

Things seem similar on the Test Tool Shed. Presumably you
can sort the test results over the entire Tool Shed via a
database search? That might help explain any pattern here.

Thanks,

Peter

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