Yes, I will look at this this week.  I'm using a clean copy of galaxy-dist
and will apply against that to see how it works.  Thanks a bunch Dave B for
doing this!

On Thu, Jan 8, 2015 at 9:42 AM, John Chilton <jmchil...@gmail.com> wrote:

> Hey Ryan,
>
> It looks like Dave B. has come to rescue with an egg and a patch that
> implements this:
>
>
> https://bitbucket.org/galaxy/galaxy-central/pull-request/626/upgrade-mercurial-egg-to-324
>
> It probably won't be back-ported to the forthcoming January release
> but I would suspect the raw patch
> (
> https://api.bitbucket.org/2.0/repositories/galaxy/galaxy-central/diff/davebgx/galaxy-central:625bf1fd88ee..63d901ca0e6e
> )
> will apply cleanly against the last few releases. If you have some
> time and want to apply it to your release and let us know if it fixes
> your problems that would probably help the pull request along.
>
> -John
>
> On Wed, Jan 7, 2015 at 10:56 AM, Ryan G <ngsbioinformat...@gmail.com>
> wrote:
> > Yes, I think I found the root cause...its because the Galaxy egg for
> > mercurial is using an older version of Mercurial that has this known bug.
> > The only real fix is to upgrade the Galaxy egg to mercurial 3.x.
> >
> > The only way I know of to test this is to build a new Galaxy egg which
> I'm
> > not familiar with.  But as I understand it the new Mercurial version will
> > also break Galaxy.
> >
> >
> > On Mon, Jan 5, 2015 at 6:19 PM, Björn Grüning <bjoern.gruen...@gmail.com
> >
> > wrote:
> >>
> >> Hi Ryan,
> >>
> >> unfortunately not (yet). But I'm really surprised you are getting this
> >> error. It working for me and in our docker containers and other
> >> deployments. Can we try to detect the root cause of this error? Do you
> >> have conflicting mercurial version.
> >>
> >> Cheers,
> >> Bjoern
> >>
> >> > Thanks.  Is there an alternative way I can install tools from the
> >> > Toolshed?  This problem pretty much renders the toolshed unusable for
> >> > me...
> >> >
> >> > On Mon, Jan 5, 2015 at 11:14 AM, John Chilton <jmchil...@gmail.com>
> >> > wrote:
> >> >
> >> >> It is certainly the case that Galaxy should be using the latest
> >> >> version of mercurial given a number of high profile bugs with older
> >> >> versions. Unfortunately it doesn't seem possible to just drop the new
> >> >> version it - there are some API changes that prevent Galaxy from
> >> >> loading when doing this and the number of people who can add new eggs
> >> >> to Galaxy is low.
> >> >>
> >> >> I have created a Trello card to track this issue:
> >> >>
> >> >> https://trello.com/c/9A9uIav0
> >> >>
> >> >> Let us know if you happen to find a workaround for this issue.
> >> >>
> >> >> -John
> >> >>
> >> >>
> >> >> On Mon, Dec 22, 2014 at 2:55 PM, Ryan G <ngsbioinformat...@gmail.com
> >
> >> >> wrote:
> >> >>> I've been trying to track down why I can't get anything from the
> >> >>> toolshed
> >> >>> installed and finally have it figured out.
> >> >>>
> >> >>> Whenever I tried to install anything I always got an Error with no
> >> >>> explanation of what the error was.  After enabling Debug messages
> into
> >> >> the
> >> >>> log file, I see the error is:
> >> >>>
> >> >>> tool_shed.util.hg_util DEBUG 2014-12-22 14:47:48,910 Error cloning
> >> >>> repository: httpsconnection instance has no attribute
> '_set_hostport'
> >> >>>
> >> >>> I googled around and found out this is a known bug/issue with older
> >> >> version
> >> >>> of Mercurial and was fixed in v3.
> >> >>>
> >> >>> I added a line to hg_util.py to see where it picks up hg.  Its using
> >> >> version
> >> >>> 2.2.3.  Indeed, one of the eggs downloaded by Galaxy is
> >> >>> mercurial-2.2.3.
> >> >>>
> >> >>> I have the newest version of mercurial installed in my site-packages
> >> >> folder
> >> >>> but I guess that's not what galaxy wants.  So my question is, how
> do I
> >> >> get
> >> >>> Galaxy to use the latest version of Mercurial?  And, Why did it
> >> >>> download
> >> >> an
> >> >>> older version?
> >> >>>
> >> >>> ___________________________________________________________
> >> >>> Please keep all replies on the list by using "reply all"
> >> >>> in your mail client.  To manage your subscriptions to this
> >> >>> and other Galaxy lists, please use the interface at:
> >> >>>   https://lists.galaxyproject.org/
> >> >>>
> >> >>> To search Galaxy mailing lists use the unified search at:
> >> >>>   http://galaxyproject.org/search/mailinglists/
> >> >>
> >> >
> >> >
> >> >
> >> > ___________________________________________________________
> >> > Please keep all replies on the list by using "reply all"
> >> > in your mail client.  To manage your subscriptions to this
> >> > and other Galaxy lists, please use the interface at:
> >> >   https://lists.galaxyproject.org/
> >> >
> >> > To search Galaxy mailing lists use the unified search at:
> >> >   http://galaxyproject.org/search/mailinglists/
> >> >
> >
> >
>
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