It was only ever used for one tool that I know of, but we should make
it work since we try to never break backward compatibility. If you add
the 'history=None' kwarg is that sufficient to fix the problem?
However, I think a better solution to this problem is to build it into
dataset parameters. Anywhere a dataset can be provided it should be an
option to provide a library dataset. Then one could imagine an option
to restrict to only library datasets and a specific library.
On Wed, Jan 14, 2015 at 7:08 PM, Dooley, Damion <damion.doo...@bccdc.ca> wrote:
> I just discovered a scant reference to this on the ToolSyntax page, and
> tracked it down to something that looks like it was introduced around 2011:
> a "LibraryDatasetToolParameter"
> changeset: 8553b02ce9ee
> user: kanwei
> date: 2011-07-19 03:56:23
> summary: Tools: Add new LibraryDataset tool parameter to expose LDDAs to
> tools. Use trackster's modal popup interface for item selection. Add new
> InputWrapper that exposes LDDA templates as well.
> Now I can't quite fathom the syntax around this but it appears to be broken -
> python error displayed:
> TypeError: get_initial_value() got an unexpected keyword argument 'history'
> Which is because in the galaxy code the
> def get_initial_value( self, trans, context )
> function is missing a "history=None" parameter like other types have?!
> But is this input type essentially discontinued (no other refs to it on the
> web) or is it supposed to be operational?
> I was hoping for a tool input that would list a particular libraries
> datasets, so that I could obtain their file paths for use in my tool.
> <param name="test" type="library_data" label="test" help="test help"/>
> <options library="Reference Bins">
> Hsiao lab, BC Public Health Microbiology & Reference Laboratory, BC Centre
> for Disease Control
> 655 West 12th Avenue, Vancouver, British Columbia, V5Z 4R4 Canada
> Please keep all replies on the list by using "reply all"
> in your mail client. To manage your subscriptions to this
> and other Galaxy lists, please use the interface at:
> To search Galaxy mailing lists use the unified search at:
Please keep all replies on the list by using "reply all"
in your mail client. To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
To search Galaxy mailing lists use the unified search at: