Sorry for the delayed response - I am not really an expert on Galaxy's egg stuff - but I believe running `python scripts/fetch_eggs.py` before starting Galaxy usually fixes these problems for reasons I don't understand. One probably shouldn't need to manually install mock or pycrypto though.
Sorry for the problems and thanks for using Galaxy (and upgrading)! -John On Thu, Jan 15, 2015 at 10:42 AM, Ulf Schaefer <ulf.schae...@phe.gov.uk> wrote: > Hi all > > For what it's worth, I manually installed mock (and pycrypto because > that was the next thing it complained about) and it worked after that. > > Ulf > > On 14/01/15 14:23, Ulf Schaefer wrote: >> Hi all >> >> After the announcements this morning, I upgraded to the latest stable >> release as suggested (latest_2015.01.13). >> >> Our server is now not starting with the following error message. Any >> ideas what I might be doing wrong? >> >> Thanks a lot >> Ulf >> >> --- >> >> galaxy.eggs DEBUG 2015-01-14 14:10:25,272 Fetched >> http://eggs.galaxyproject.org/bioblend/bioblend-0.4.2-py2.6.egg >> galaxy.eggs ERROR 2015-01-14 14:10:25,290 One of Galaxy's managed eggs >> depends on something which is missing, this is almost certainly a bug in >> the egg distribution. >> galaxy.eggs ERROR 2015-01-14 14:10:25,291 Dependency "bioblend" requires >> "mock" >> Traceback (most recent call last): >> File "./scripts/paster.py", line 33, in <module> >> serve.run() >> File "/home/galaxy/galaxy-dist/lib/galaxy/util/pastescript/serve.py", >> line 1049, in run >> invoke(command, command_name, options, args[1:]) >> File "/home/galaxy/galaxy-dist/lib/galaxy/util/pastescript/serve.py", >> line 1055, in invoke >> exit_code = runner.run(args) >> File "/home/galaxy/galaxy-dist/lib/galaxy/util/pastescript/serve.py", >> line 220, in run >> result = self.command() >> File "/home/galaxy/galaxy-dist/lib/galaxy/util/pastescript/serve.py", >> line 643, in command >> app = loadapp( app_spec, name=app_name, relative_to=base, >> global_conf=vars) >> File >> "/home/galaxy/galaxy-dist/lib/galaxy/util/pastescript/loadwsgi.py", line >> 350, in loadapp >> return loadobj(APP, uri, name=name, **kw) >> File >> "/home/galaxy/galaxy-dist/lib/galaxy/util/pastescript/loadwsgi.py", line >> 375, in loadobj >> return context.create() >> File >> "/home/galaxy/galaxy-dist/lib/galaxy/util/pastescript/loadwsgi.py", line >> 813, in create >> return self.object_type.invoke(self) >> File >> "/home/galaxy/galaxy-dist/lib/galaxy/util/pastescript/loadwsgi.py", line >> 249, in invoke >> return fix_call(context.object, context.global_conf, >> **context.local_conf) >> File >> "/home/galaxy/galaxy-dist/lib/galaxy/util/pastescript/loadwsgi.py", line >> 97, in fix_call >> val = callable(*args, **kw) >> File >> "/home/galaxy/galaxy-dist/lib/galaxy/webapps/galaxy/buildapp.py", line >> 54, in app_factory >> webapp.add_ui_controllers( 'galaxy.webapps.galaxy.controllers', app ) >> File "/home/galaxy/galaxy-dist/lib/galaxy/web/framework/webapp.py", >> line 119, in add_ui_controllers >> module = import_module( module_name ) >> File >> "/home/galaxy/galaxy-dist/lib/galaxy/util/backports/importlib/__init__.py", >> line 37, in import_module >> __import__(name) >> File >> "/home/galaxy/galaxy-dist/lib/galaxy/webapps/galaxy/controllers/cloudlaunch.py", >> line 21, in <module> >> eggs.require('bioblend') >> File "/home/galaxy/galaxy-dist/lib/galaxy/eggs/__init__.py", line >> 411, in require >> return c[req.project_name].require() >> File "/home/galaxy/galaxy-dist/lib/galaxy/eggs/__init__.py", line >> 239, in require >> dists = self.resolve() >> File "/home/galaxy/galaxy-dist/lib/galaxy/eggs/__init__.py", line >> 170, in resolve >> dists = pkg_resources.working_set.resolve( ( >> self.distribution.as_requirement(), ), env, self.fetch ) >> File "/home/galaxy/galaxy-dist/lib/pkg_resources.py", line 569, in >> resolve >> raise VersionConflict(dist,req) # XXX put more info here >> pkg_resources.VersionConflict: (bioblend 0.4.2 >> (/home/galaxy/galaxy-dist/eggs/bioblend-0.4.2-py2.6.egg), >> Requirement.parse('mock')) >> >> --- >> >> ************************************************************************** >> The information contained in the EMail and any attachments is confidential >> and intended solely and for the attention and use of the named addressee(s). >> It may not be disclosed to any other person without the express authority of >> Public Health England, or the intended recipient, or both. 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