My first thought is the bug mentioned here -
along with potential work arounds. Are you able to confirm that this
is or is not the problem at all?
On Fri, Jan 23, 2015 at 2:37 PM, Jeltje van Baren
> I'm following instructions at
> When I try to run the concatenate-datasets on two input files, two odd
> things happen. First, TWO nearly identical commands are generated in the
> History panel, only differing in their output filename. In paster.log, only
> the second one shows up. Second, the program fails, with this info in the
> An error occurred with this dataset:
> Galaxy slots passed through contain as 1
> line 2: can't create
> This happens for both commands in the History panel, only the output
> filename in the other error is dataset_15.dat
> Oddly, the dataset_14.dat and dataset_15.dat are both created during this
> command, they just end up empty.
> galaxy.jobs.runners DEBUG 2015-01-23 11:08:35,973 (10) command is: docker
> inspect busybox:ubuntu-14.04 > /dev/null 2>&1
> [ $? -ne 0 ] && docker pull busybox:ubuntu-14.04 > /dev/null 2>&1
> docker run -e "GALAXY_SLOTS=$GALAXY_SLOTS" -v
> --net none busybox:ubuntu-14.04
> return_code=$?; if [ -f
> ] ; then cp
> ; fi; sh -c "exit $return_code"
> galaxy.jobs.runners.local DEBUG 2015-01-23 11:08:36,040 (10) executing job
> galaxy.jobs DEBUG 2015-01-23 11:08:36,091 (10) Persisting job destination
> (destination id: docker_local)
> What could be happening here, and how do I fix it?
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