Slight clarification on that -- main toolshed update is a separate process
since it runs #stable, but we're working on getting that updated as well.

On Fri Jan 30 2015 at 12:26:06 PM Dannon Baker <dannon.ba...@gmail.com>
wrote:

> I'm actually working on rolling out much better error capturing for the
> toolshed via sentry (getsentry.org) and expect to update the test
> toolshed again with it shortly.  I'd guess the main toolshed won't be too
> far behind.
>
> On Fri Jan 30 2015 at 12:24:47 PM Peter Cock <p.j.a.c...@googlemail.com>
> wrote:
>
>> Hi Dannon, Nicola,
>>
>> This sounds very promising - I'll rerun the TravisCI job and we can
>> expect it to work this time :)
>>
>> https://bitbucket.org/galaxy/galaxy-central/commits/3618b7a9
>> 1e23096ecf7ce5842c1e16c749251a4d
>> (half an hour ago!)
>>
>> When will this reach the Tool Shed and Test Tool Shed? The upload job
>> failure seems to be the root cause of many of the unexpected test
>> failures.
>>
>> Thanks,
>>
>> Peter
>>
>> On Fri, Jan 30, 2015 at 5:19 PM, Dannon Baker <dannon.ba...@gmail.com>
>> wrote:
>> > Yep, the FutureWarning that that commit resolves would have caused the
>> > upload job to end up as an error; I'm betting this is what was causing
>> > Peter's issues too.
>> >
>> >
>> > On Fri Jan 30 2015 at 12:18:10 PM Nicola Soranzo <nsora...@tiscali.it>
>> > wrote:
>> >>
>> >> Hi Peter,
>> >> I was also getting "Exception: History in error state" errors with
>> >> BioBlend continuous integration testing, but those seem to be fixed
>> with
>> >> latest Dannon's commit 3618b7a91e23096ecf7ce5842c1e16c749251a4d .
>> >>
>> >> Nicola
>> >>
>> >> Il 30.01.2015 17:36 Peter Cock ha scritto:
>> >>
>> >> Retitling thread,
>> >>
>> >> On Thu, Nov 6, 2014 at 11:08 AM, Peter Cock <p.j.a.c...@googlemail.com
>> >
>> >> wrote:
>> >>
>> >> Thanks Dave, The good news is yes, the tests are running again on the
>> Test
>> >> Tool Shed (although not the main Tool Shed yet), and many of my tools
>> now
>> >> have successful test results from last night. e.g. My new basic mummer
>> tool
>> >> which now has a full set of dependency packages thanks to Bjoern:
>> >> https://testtoolshed.g2.bx.psu.edu/view/peterjc/mummer The bad news
>> is there
>> >> are many unexpected failures with: "Exception: History in error
>> state." I'm
>> >> sure you'll learn more once you look over the logs, Thank you, Peter
>> >>
>> >> Right now the mummer example given above is passing,
>> >> but I am still getting this error on some of my tools, e.g.
>> >>
>> >> https://testtoolshed.g2.bx.psu.edu/view/peterjc/blast2go
>> >> tested 2015-01-25 11:21:12
>> >>
>> >> https://testtoolshed.g2.bx.psu.edu/view/peterjc/get_orfs_or_cdss
>> >> tested 2015-01-25 10:52:03
>> >>
>> >> (Many of my other tools are also currently listed with
>> >> different unexpected failures, some of which include
>> >> the "Exception: History in error state." traceback.)
>> >>
>> >> Interestingly, I've just got what appears to be the same
>> >> exception from a TravisCI test run (following a trivial
>> >> change to README files):
>> >>
>> >> https://travis-ci.org/peterjc/galaxy_blast/builds/48893916
>> >>
>> >> e.g. (one of many similar failing tests in this log)
>> >> ======================================================================
>> >> ERROR: test_tool_000000
>> >> (functional.test_toolbox.TestForTool_blastxml_to_top_descr)
>> >> BLAST top hit descriptions ( blastxml_to_top_descr ) > Test-1
>> >> ----------------------------------------------------------------------
>> >> Traceback (most recent call last):
>> >>   File
>> >> "/home/travis/build/peterjc/galaxy_blast/galaxy-central-mast
>> er/test/functional/test_toolbox.py",
>> >> line 268, in test_tool
>> >>     self.do_it( td )
>> >>   File
>> >> "/home/travis/build/peterjc/galaxy_blast/galaxy-central-mast
>> er/test/functional/test_toolbox.py",
>> >> line 37, in do_it
>> >>     stage_data_in_history( galaxy_interactor, testdef.test_data(),
>> >> test_history, shed_tool_id )
>> >>   File
>> >> "/home/travis/build/peterjc/galaxy_blast/galaxy-central-mast
>> er/test/base/interactor.py",
>> >> line 42, in stage_data_in_history
>> >>     upload_wait()
>> >>   File
>> >> "/home/travis/build/peterjc/galaxy_blast/galaxy-central-mast
>> er/test/base/interactor.py",
>> >> line 279, in wait
>> >>     while not self.__history_ready( history_id ):
>> >>   File
>> >> "/home/travis/build/peterjc/galaxy_blast/galaxy-central-mast
>> er/test/base/interactor.py",
>> >> line 297, in __history_ready
>> >>     return self._state_ready( state, error_msg="History in error
>> state." )
>> >>   File
>> >> "/home/travis/build/peterjc/galaxy_blast/galaxy-central-mast
>> er/test/base/interactor.py",
>> >> line 356, in _state_ready
>> >>     raise Exception( error_msg )
>> >> Exception: History in error state.
>> >>
>> >>
>> >> I do not recall seeing this problem locally when using my
>> >> development instllation of galaxy-central.
>> >>
>> >> The TravisCI failure suggests this could be a stochastic
>> >> resource contention (I can re-run the TravisCI build and
>> >> see if this works second time round?), which is more prone
>> >> to fail under the Tool Shed framework?
>> >>
>> >> Peter
>> >> ___________________________________________________________
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>> >>
>> >>
>> >>
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