Hey Guys,

  Thanks for the patches - it looks like Eric Enns came up with similar
ones a while back (
http://dev.list.galaxyproject.org/Patch-in-reference-to-trello-card-968-td4660438.html).
The bad news is I just went through and made a bunch PEP-8 fixes to the
reports code so all the patches are potentially invalid now - the good news
is I followed up with an alternative fix that should maintain the current
behavior for postgres but also work with MySQL based on your patches (
https://bitbucket.org/galaxy/galaxy-central/commits/ce2776f88e9db53886b8879a948b19ce2a513835)
- so hopefully Galaxy will work without modification with the next release
(March I suppose).

Thanks again!

-John

P.S. Like Hans said though - if you can migrate Galaxy off MySQL take the
opportunity to do so though.


On Thu, Feb 5, 2015 at 12:00 PM, Fernandez Edgar <
edgar.fernan...@umontreal.ca> wrote:

>  Here’s some other modifications I’ve made that should be logged
> somewhere :
>
>
>
> diff workflows.py ARCHIVES/workflows.py_20150205_11.37.57
>
> 143c143
>
> <         q = sa.select( ( sa.func.date(
> model.StoredWorkflow.table.c.create_time ).label( 'date' ),sa.func.count(
> model.StoredWorkflow.table.c.id ).label( 'total_workflows' ) ),
>
> ---
>
> >         q = sa.select( ( sa.func.date_trunc( 'month', sa.func.date(
> model.StoredWorkflow.table.c.create_time ) ).label( 'date' ),sa.func.count(
> model.StoredWorkflow.table.c.id ).label( 'total_workflows' ) ),
>
> 145c145
>
> <                        group_by = [ sa.func.year (
> model.StoredWorkflow.table.c.create_time ), sa.func.month ( sa.func.date(
> model.StoredWorkflow.table.c.create_time ) ) ],
>
> ---
>
> >                        group_by = [ sa.func.date_trunc( 'month',
> sa.func.date( model.StoredWorkflow.table.c.create_time ) ) ],
>
> 177c177
>
> <         q = sa.select( ( sa.func.date(
> model.StoredWorkflow.table.c.create_time ).label( 'date' ),
>
> ---
>
> >         q = sa.select( ( sa.func.date_trunc( 'month', sa.func.date(
> model.StoredWorkflow.table.c.create_time ) ).label( 'date' ),
>
> 181c181
>
> <                        group_by = [ sa.func.year (
> model.StoredWorkflow.table.c.create_time ), sa.func.month ( sa.func.date(
> model.StoredWorkflow.table.c.create_time ) )],
>
> ---
>
> >                        group_by = [ sa.func.date_trunc( 'month',
> sa.func.date( model.StoredWorkflow.table.c.create_time ) ) ],
>
>
>
>
>
> diff sample_tracking.py ARCHIVES/sample_tracking.py_20150205_11.37.50
>
> 136c136
>
> <         q = sa.select( ( sa.func.date( model.Request.table.c.create_time
> ).label( 'date' ),sa.func.count( model.Request.table.c.id ).label(
> 'total' ) ),
>
> ---
>
> >         q = sa.select( ( sa.func.date_trunc( 'month', sa.func.date(
> model.Request.table.c.create_time ) ).label( 'date' ),sa.func.count(
> model.Request.table.c.id ).label( 'total' ) ),
>
> 138c138
>
> <                        group_by = [ sa.func.year (
> model.Request.table.c.create_time ), sa.func.month ( sa.func.date(
> model.Request.table.c.create_time ) ) ],
>
> ---
>
> >                        group_by = [ sa.func.date_trunc( 'month',
> sa.func.date( model.Request.table.c.create_time ) ) ],
>
> 169c169
>
> <         q = sa.select( ( sa.func.date( model.Request.table.c.create_time
> ).label( 'date' ),
>
> ---
>
> >         q = sa.select( ( sa.func.date_trunc( 'month', sa.func.date(
> model.Request.table.c.create_time ) ).label( 'date' ),
>
> 173c173
>
> <                        group_by = [ sa.func.year (
> model.Request.table.c.create_time ), sa.func.month ( sa.func.date(
> model.Request.table.c.create_time ) ) ],
>
> ---
>
> >                        group_by = [ sa.func.date_trunc( 'month',
> sa.func.date( model.Request.table.c.create_time ) ) ],
>
>
>
>
>
>
>
> Cordialement / Regards,
>
> Edgar Fernandez
>
>
>
>
>
> -----Message d'origine-----
> De : Fernandez Edgar
> Envoyé : February-05-15 10:55 AM
> À : 'Hans-Rudolf Hotz'; galaxy-...@bx.psu.edu
> Objet : RE: [galaxy-dev] galaxy report page - server error solution?
>
>
>
> Good catch on that one!
>
> There wasn't originally the date_trunc function there but that groups the
> jobs by months together.
>
> Thanks!!!
>
>
>
> Cordialement / Regards,
>
> Edgar Fernandez
>
>
>
> -----Message d'origine-----
>
> De : Hans-Rudolf Hotz [mailto:h...@fmi.ch <h...@fmi.ch>] Envoyé :
> February-05-15 10:49 AM À : Fernandez Edgar; galaxy-...@bx.psu.edu
> Objet : Re: [galaxy-dev] galaxy report page - server error solution?
>
>
>
> Hi again
>
>
>
> for "jobs.py" I have modified the same lines as you,
>
>                plus line 285 (group_by....)
>
>
>
> for "users.py I have modified the same lines as you
>
>
>
>
>
> Hans-Rudolf
>
>
>
>
>
>
>
> On 02/05/2015 04:20 PM, Fernandez Edgar wrote:
>
> > Actually, here’s what I came up with :
>
> >
>
> > diff users.py ARCHIVES/users.py_20150205_9.28.18
>
> >
>
> > 23c23
>
> >
>
> > <         q = sa.select( ( sa.func.date(
>
> > galaxy.model.User.table.c.create_time ).label( 'date' ),
>
> >
>
> > ---
>
> >
>
> >>         q = sa.select( ( sa.func.date_trunc( 'month', sa.func.date(
>
> >> galaxy.model.User.table.c.create_time ) ).label( 'date' ),
>
> >
>
> > 26c26
>
> >
>
> > <                        group_by = [ sa.func.year (
>
> > galaxy.model.User.table.c.create_time ), sa.func.month (
>
> > galaxy.model.User.table.c.create_time ) ],
>
> >
>
> > ---
>
> >
>
> >>                        group_by = [ sa.func.date_trunc( 'month',
>
> >> sa.func.date( galaxy.model.User.table.c.create_time ) ) ],
>
> >
>
> > 48c48
>
> >
>
> > <         q = sa.select( ( sa.func.date(
>
> > galaxy.model.User.table.c.create_time ).label( 'date' ),
>
> >
>
> > ---
>
> >
>
> >>         q = sa.select( ( sa.func.date_trunc( 'day', sa.func.date(
>
> >> galaxy.model.User.table.c.create_time ) ).label( 'date' ),
>
> >
>
> > 53c53
>
> >
>
> > <                        group_by = [ sa.func.day( sa.func.date(
>
> > galaxy.model.User.table.c.create_time ) ) ],
>
> >
>
> > ---
>
> >
>
> >>                        group_by = [ sa.func.date_trunc( 'day',
>
> >> sa.func.date( galaxy.model.User.table.c.create_time ) ) ],
>
> >
>
> > 79c79
>
> >
>
> > <         q = sa.select( ( sa.func.date(
>
> > galaxy.model.User.table.c.create_time ).label( 'date' ),
>
> >
>
> > ---
>
> >
>
> >>         q = sa.select( ( sa.func.date_trunc( 'day', sa.func.date(
>
> >> galaxy.model.User.table.c.create_time ) ).label( 'date' ),
>
> >
>
> > diff jobs.py ARCHIVES/jobs.py_20150205_9.28.22
>
> >
>
> > 282c282
>
> >
>
> > <         jobs_by_month = sa.select( ( sa.func.date(
>
> > model.Job.table.c.create_time ).label( 'date' ),
>
> >
>
> > ---
>
> >
>
> >>         jobs_by_month = sa.select( ( sa.func.date_trunc( 'month',
>
> >> model.Job.table.c.create_time ).label( 'date' ),
>
> >
>
> > 315c315
>
> >
>
> > <         jobs_in_error_by_month = sa.select( ( sa.func.date(
>
> > model.Job.table.c.create_time ).label( 'date' ),
>
> >
>
> > ---
>
> >
>
> >>         jobs_in_error_by_month = sa.select( ( sa.func.date_trunc(
>
> >> 'month', sa.func.date( model.Job.table.c.create_time ) ).label(
>
> >> 'date' ),
>
> >
>
> > 320c320
>
> >
>
> > <                                            group_by=[ sa.func.year (
>
> > model.Job.table.c.create_time ), sa.func.month ( sa.func.date(
>
> > model.Job.table.c.create_time ) ) ],
>
> >
>
> > ---
>
> >
>
> >>                                            group_by=[
>
> >> sa.func.date_trunc( 'month', sa.func.date(
>
> >> model.Job.table.c.create_time ) ) ],
>
> >
>
> > 364c364
>
> >
>
> > <         q = sa.select( ( sa.func.date( model.Job.table.c.create_time
>
> > ).label( 'date' ),
>
> >
>
> > ---
>
> >
>
> >>         q = sa.select( ( sa.func.date_trunc( 'month', sa.func.date(
>
> >> model.Job.table.c.create_time ) ).label( 'date' ),
>
> >
>
> > 371c371
>
> >
>
> > <                        group_by=[ sa.func.year (
>
> > model.Job.table.c.create_time ), sa.func.month ( sa.func.date(
>
> > model.Job.table.c.create_time ) ) ],
>
> >
>
> > ---
>
> >
>
> >>                        group_by=[ sa.func.date_trunc( 'month',
>
> >> sa.func.date( model.Job.table.c.create_time ) ) ],
>
> >
>
> > 420c420
>
> >
>
> > <         q = sa.select( ( sa.func.date( model.Job.table.c.create_time
>
> > ).label( 'date' ),
>
> >
>
> > ---
>
> >
>
> >>         q = sa.select( ( sa.func.date_trunc( 'month', sa.func.date(
>
> >> model.Job.table.c.create_time ) ).label( 'date' ),
>
> >
>
> > 425c425
>
> >
>
> > <                        group_by=[ sa.func.year (
>
> > model.Job.table.c.create_time ), sa.func.month ( sa.func.date(
>
> > model.Job.table.c.create_time ) ) ],
>
> >
>
> > ---
>
> >
>
> >>                        group_by=[ sa.func.date_trunc( 'month',
>
> >> sa.func.date( model.Job.table.c.create_time ) ) ],
>
> >
>
> > Let me know what you think!!!
>
> >
>
> > Cordialement / Regards,
>
> >
>
> > Edgar Fernandez
>
> >
>
> > *De :*Fernandez Edgar
>
> > *Envoyé :* February-05-15 9:49 AM
>
> > *À :* 'galaxy-...@bx.psu.edu'
>
> > *Objet :* galaxy report page - server error solution?
>
> >
>
> > Hello guys,
>
> >
>
> > So I’ve been working on the Galaxy report page.
>
> >
>
> > It works fine however I’m using MySQL and I’m getting some server
>
> > errors on some webpages.
>
> >
>
> > I found the solution:
>
> > https://lists.galaxyproject.org/pipermail/galaxy-dev/2009-August/00064
>
> > 1.html
>
> >
>
> > But can some please confirm the following:
>
> >
>
> > 1.The location of the files users.py and jobs.py is
>
> > /home/galaxy/galaxy-prod/lib/galaxy/webapps/reports/controllers
>
> >
>
> > 2.There is three (3) "select closes" using five (5) "date_trunc"
>
> > functions in users.py.
>
> >
>
> > 3.There is eight (8) "select closes" using fourteen (4) "date_trunc"
>
> > functions in jobs.py.
>
> >
>
> > 4.Here is an example of what I can come up with. Is it correct?
>
> >
>
> > ·WRONG:
>
> >
>
> > jobs_in_error_by_month = sa.select( ( sa.func.date_trunc( 'month',
>
> > sa.func.date( model.Job.table.c.create_time ) ).label( 'date' ),
>
> > sa.func.count( model.Job.table.c.id ).label('total_jobs' ) ),
>
> >
>
> > whereclause=sa.and_ ( model.Job.table.c.state == 'error',
>
> >
>
> > model.Job.table.c.user_id != monitor_user_id ),
>
> >
>
> > from_obj=[ model.Job.table ],
>
> >
>
> > group_by=[ sa.func.date_trunc( 'month', sa.func.date(
>
> > model.Job.table.c.create_time ) ) ],
>
> >
>
> > order_by=[ sa.desc( 'date' ) ] )
>
> >
>
> > ·RIGHT:
>
> >
>
> > jobs_in_error_by_month = sa.select( ( sa.func.count(
>
> > model.Job.table.c.id ).label('total_jobs' ) ),
>
> >
>
> > whereclause=sa.and_ ( model.Job.table.c.state == 'error',
>
> >
>
> > model.Job.table.c.user_id != monitor_user_id ),
>
> >
>
> > from_obj=[ model.Job.table ],
>
> >
>
> > group_by=[ day(model.Job.table.c.create_time),
>
> > month(model.Job.table.c.create_time),
>
> > year(model.Job.table.c.create_time) ],
>
> >
>
> > order_by=[ sa.desc( 'date' ) ] )
>
> >
>
> > Cordialement / Regards,
>
> >
>
> > **
>
> >
>
> > *Edgar Fernandez*
>
> >
>
> > System Administrator (Linux)
>
> >
>
> > Direction Générale des Technologies de l'Information et de la
>
> > Communication
>
> >
>
> > (  Bur. : *1-514-343-6111 poste 16568**//*
>
> >
>
> > *//*
>
> >
>
> > */Université de Montréal/**//*
>
> >
>
> > PAVILLON ROGER-GAUDRY, bureau X-218
>
> >
>
> >
>
> >
>
> > ___________________________________________________________
>
> > Please keep all replies on the list by using "reply all"
>
> > in your mail client.  To manage your subscriptions to this and other
>
> > Galaxy lists, please use the interface at:
>
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>
> >
>
> > To search Galaxy mailing lists use the unified search at:
>
> >    http://galaxyproject.org/search/mailinglists/
>
> >
>
> ___________________________________________________________
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