Hello,

You probably need to reassign the datatype to be "fastqsanger", but double
check the quality score scaling first. You FastQC run will be part of this.
Our wiki has the details here, sections 2.9 & 2.10.1
http://wiki.galaxyproject.org/Support

Best,
Jen
Galaxy team

On Wed, Feb 11, 2015 at 10:10 AM, Xiong, Min, <mxio...@cmh.edu> wrote:

>  Hi,
>
> When I use BWA alignment, FASTQ file can't be detected. What reason cause
> it?
>
> The attached file contains figure from galaxy, you will see I have good
> fastq file which can be reported by FastQC.
>
>
>
> Thanks
>
>
>
> Min Xiong, Ph.D.
>
> Post-doctoral Fellow
>
> Shui Q. Ye Lab  Group
>
> Division of Experimental and Translational Genetics
>
> Department of Pediatrics
>
> Children's Mercy Hospital
>
> 2401 Gillham Road
>
> Kansas City, MO 64108
>
>
>
>
>
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-- 
Jennifer Hillman-Jackson
http://galaxyproject.org
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