So I am doing some debugging and it looks like in the from_html function in
the SelectToolParameter class, it gets the legal values for the build using
the get_legal_values function. This returns the correct values when I
choose only one gtf file, but when I choose multiple gtf files the list of
legal values is empty. I haven't figured out why this is happening.
- Nik.

On Wed, Feb 18, 2015 at 10:45 PM, Nikhil Joshi <najo...@ucdavis.edu> wrote:

> And, yes, all of the gtf files have the correct database build associated
> with them.
>
> On Wed, Feb 18, 2015 at 6:29 PM, Nikhil Joshi <najo...@ucdavis.edu> wrote:
>
>> Hi all,
>>
>> We run our own custom galaxy instance in the Amazon Cloud and I am
>> updating our instance with the latest toolshed files. For cuffmerge, in
>> past revisions, we would just have a button to add another GTF input.
>> However, this latest one (10:b6e3849293b1
>> <https://toolshed.g2.bx.psu.edu/repository/view_changelog?id=84bbebf45888f374>)
>> that has been replaced with a multi-select. We also have a few built-in
>> genomes that we use with cuffmerge. When I choose the first GTF file (using
>> locally cached sequence data) it will populate the reference genome
>> correctly with our built-in genomes. However, once I choose more than one
>> GTF file, I get one of two errors:
>>
>>   No reference genome is available for the build associated with the
>> selected input dataset
>> OR
>>  An invalid option was selected, please verify
>>
>> The built-in genomes are definitely there and available for cuffmerge,
>> but for some reason choosing more than one GTF file in the multi-select
>> causes an error. Is this a bug or am I doing something wrong?
>>
>> - Nik.
>>
>>
>>
>> --
>> Nikhil Joshi
>> Bioinformatics Analyst/Programmer
>> UC Davis Bioinformatics Core
>> http://bioinformatics.ucdavis.edu/
>> najoshi -at- ucdavis -dot- edu
>> 530.752.2698 (w)
>>
>
>
>
> --
> Nikhil Joshi
> Bioinformatics Analyst/Programmer
> UC Davis Bioinformatics Core
> http://bioinformatics.ucdavis.edu/
> najoshi -at- ucdavis -dot- edu
> 530.752.2698 (w)
>



-- 
Nikhil Joshi
Bioinformatics Analyst/Programmer
UC Davis Bioinformatics Core
http://bioinformatics.ucdavis.edu/
najoshi -at- ucdavis -dot- edu
530.752.2698 (w)
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