I would suggest to open an issue on
20.02.2015 10:28 Nikhil Joshi ha scritto:
> So I am doing some
debugging and it looks like in the from_html function in the
SelectToolParameter class, it gets the legal values for the build using
the get_legal_values function. This returns the correct values when I
choose only one gtf file, but when I choose multiple gtf files the list
of legal values is empty. I haven't figured out why this is happening. -
> On Wed, Feb 18, 2015 at 10:45 PM, Nikhil Joshi wrote:
And, yes, all of the gtf files have the correct database build
associated with them.
>> On Wed, Feb 18, 2015 at 6:29 PM, Nikhil
>>> Hi all,
>>> We run our own custom galaxy
instance in the Amazon Cloud and I am updating our instance with the
latest toolshed files. For cuffmerge, in past revisions, we would just
have a button to add another GTF input. However, this latest one
(10:b6e3849293b1 ) that has been replaced with a multi-select. We
also have a few built-in genomes that we use with cuffmerge. When I
choose the first GTF file (using locally cached sequence data) it will
populate the reference genome correctly with our built-in genomes.
However, once I choose more than one GTF file, I get one of two
>>> No reference genome is available for the build
associated with the selected input dataset
invalid option was selected, please verify
>>> The built-in genomes are
definitely there and available for cuffmerge, but for some reason
choosing more than one GTF file in the multi-select causes an error. Is
this a bug or am I doing something wrong?
>>> - Nik.
>>> Nikhil Joshi
>>> Bioinformatics Analyst/Programmer
Davis Bioinformatics Core
>>> http://bioinformatics.ucdavis.edu/ 
najoshi -at- ucdavis -dot- edu
>>> 530.752.2698 (w)
>> Bioinformatics Analyst/Programmer
>> UC Davis
>> http://bioinformatics.ucdavis.edu/ 
-at- ucdavis -dot- edu
>> 530.752.2698 (w)
> Nikhil Joshi
> UC Davis Bioinformatics Core
> najoshi -at- ucdavis -dot-
> 530.752.2698 (w)
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