The Tophat2 entry screen does not list the reference genomes, however Bowtie2 does list them ( the ones I have in the bowtie2_indices.loc). The bowtie2_indices.loc states that this file works for both Bowtie2 and Tophat2. -- David Lapointe Ph.D. Sr. Bioinformatics Specialist Research and Geospatial Technology Services Tufts Technology Services (TTS) 16 Dearborn Road Somerville MA 02144
Phone: 617-627-5319 Fax: 617-627-3667 http://it.tufts.edu
___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
