Yeah - that is unfortunate - I agree completely that the resulting
datasets should be red. I have created a Trello card here:

https://trello.com/c/A6LrdjUU

-John

On Thu, Feb 26, 2015 at 5:19 AM, Peter Cock <p.j.a.c...@googlemail.com> wrote:
> On Wed, Feb 25, 2015 at 5:33 PM, Peter Cock <p.j.a.c...@googlemail.com> wrote:
>> Hi all,
>>
>> Using either the legacy upload tool, or the new upload widget, the
>> following FTP URL *appears* to load into Galaxy correctly giving
>> a green history entry.
>>
>> However, on closer inspection it is an empty file with this peep text:
>>
>> Unable to fetch
>> ftp://ftp.sanger.ac.uk/pub/pathogens/Bursaphelenchus/xylophilus/Assembly-v1.2/BurXv1.2.supercontigs.fa.gz
>> [Errno ftp error] 550 pathogens: No such file or directory
>>
>> Clearly this should have been treated as a failure (red history entry).
>>
>> Should I file this as a bug on Trello?
>>
>> It seems there is a problem with the Sanger folder permissions which
>> trips up Galaxy and curl (but does not bother Firefox and wget):
>>
>> $ curl -O 
>> ftp://ftp.sanger.ac.uk/pub/pathogens/Bursaphelenchus/xylophilus/Assembly-v1.2/BurXv1.2.supercontigs.fa.gz
>>   % Total    % Received % Xferd  Average Speed   Time    Time     Time  
>> Current
>>                                  Dload  Upload   Total   Spent    Left  Speed
>>   0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     >> 0
>> curl: (9) Server denied you to change to the given directory
>>
>> Using curl -v for verbose mode it tries to walk the path (as per the
>> https://www.ietf.org/rfc/rfc1738.txt standard) and fails with the
>> command "CWD pathogens" matching the Galaxy error.
>
> The reply from Sanger was that "pathogens" is actually an alias
> for "project/pathogens" and as a workaround this longer URL can
> be used with curl or Galaxy:
>
> ftp://ftp.sanger.ac.uk/pub/project/pathogens/Bursaphelenchus/xylophilus/Assembly-v1.2/BurXv1.2.supercontigs.fa.gz
>
> The problem with Galaxy failing to detect the FTP error with the
> shorter URL remains:
>
> ftp://ftp.sanger.ac.uk/pub/pathogens/Bursaphelenchus/xylophilus/Assembly-v1.2/BurXv1.2.supercontigs.fa.gz
>
> Regards,
>
> Peter
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