Hi Martin,

Thanks. I fixed the problems in the .xml files, now referring to 
“../match_library.py” .

Now the error I get when I try to reset the repository metadata is 502:

502 Bad Gateway
________________________________
nginx/1.2.1


Regards,

Pieter

From: Martin Čech [mailto:mar...@bx.psu.edu]
Sent: donderdag 19 maart 2015 15:02
To: Lukasse, Pieter; galaxy-dev@lists.galaxyproject.org
Subject: Re: [galaxy-dev] wrong validation message in toolshed

Hi Pieter,
there seems to be either multiple incorrect links to the file or the wrappers 
expect multiple files that are missing from the repo. E.g. your wrapper 
library_lookup.xml refers to a file /GCMS/match_library.py which does not 
exist. (on this line: <code file="match_library.py" />)

After you correct these links you might want to 'Reset repository metadata'.

Martin

On Thu, Mar 19, 2015 at 8:18 AM Lukasse, Pieter 
<pieter.luka...@wur.nl<mailto:pieter.luka...@wur.nl>> wrote:
Hi ,

I’m getting this error message, which is not correct since the file IS 
available in the repository.

Metadata may have been defined for some items in revision 'f70b775dcaa5'. 
Correct the following problems if necessary and reset metadata.
create_model.xml - This file refers to a missing file match_library.py. Upload 
a file named match_library.py to the repository to correct this error.
library_lookup.xml - This file refers to a missing file match_library.py. 
Upload a file named match_library.py to the repository to correct this error.
query_metexp.xml - This file refers to a missing file match_library.py. Upload 
a file named match_library.py to the repository to correct this error.
query_mass_repos.xml - This file refers to a missing file match_library.py. 
Upload a file named match_library.py to the repository to correct this error.
metams_lcms_annotate.xml - This file refers to a missing file match_library.py. 
Upload a file named match_library.py to the repository to correct this error.
rankfilterGCMS_tabular.xml - This file refers to a missing file 
match_library.py. Upload a file named match_library.py to the repository to 
correct this error.
metams_lcms_annotate.xml - This file refers to a missing file match_library.py. 
Upload a file named match_library.py to the repository to correct this error.

I installed the package anyway and it works, which proves there is no real 
problem.

See https://toolshed.g2.bx.psu.edu/view/pieterlukasse/prims_metabolomics2

Regards,

Pieter Lukasse
Wageningen UR, Plant Research International
Department of Bioinformatics (Bioscience)
Wageningen Campus, Building 107, Droevendaalsesteeg 1, 6708 PB,
Wageningen, the Netherlands
T: +31-317481122;
M: +31-628189540;
skype: pieter.lukasse.wur
http://www.pri.wur.nl<http://www.pri.wur.nl/>

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