On Mon, Mar 23, 2015 at 1:41 PM, John Chilton <jmchil...@gmail.com> wrote:
> Hey Peter,
>   Thanks for continuing to apply pressure on these issues. I have
> pushed some logging into Galaxy's development branch
> (https://github.com/galaxyproject/galaxy/commit/8cb06d7fc2913b4d83ca01b50d76e9607bbe379d)
> that should make that error more informative. I don't know when that
> will get pushed out to bitbucket and the shed retested - but once
> those two things happen we will hopefully have a better idea what the
> problem is (probably some subtle deployment problem - some
> incompatible version of samtools on the path? samtools on Galaxy's
> path but not the test script's path?).
> -John

Lovely - I agree this seems the most likely cause, so fingers crossed.

Thank you,

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