I think it is probably a pair of bugs you are seeing: The wrong database being selected is probably this: https://trello.com/c/72WuZ8mu. It would be interesting to know if reverting this pull request https://bitbucket.org/galaxy/galaxy-central/pull-request/433/fix-allow-editing-workflows-on-the-fly-for/diff fixes it - that would be a good indication this is the problem.
The tool running even though no valid inputs are found - is a sort of known-ish issue but I cannot find any Trello card on it. I know I have some WIP on a fix here: https://github.com/jmchilton/galaxy/commit/900b7bbbf7f0084a86da9b737967fd8eb9d9f5fe ... and a related failing test case here. https://github.com/galaxyproject/galaxy/blob/dev/test/api/test_tools.py#L223 The fix unfortunately is messy and will likely break stuff. -John On Tue, Mar 31, 2015 at 1:03 PM, Peter Cock <p.j.a.c...@googlemail.com> wrote: > Thanks Dan, > > That's very reassuring - will you file a Trello issue, or should I? > > Peter > > > On Tue, Mar 31, 2015 at 5:56 PM, Daniel Blankenberg <d...@bx.psu.edu> wrote: >> >> Hi Peter, >> >> I just wanted to chime in and say that I have been able to reproduce >> this issue locally (on a different tool), and I’d consider it a pretty >> significant bug for reproducibility, etc. >> >> Thanks, >> >> Dan > >>>> On Tue, Mar 31, 2015 at 11:31 AM, Peter Cock <p.j.a.c...@googlemail.com> >>>> wrote: >>>>> ... >>>>> >>>>> Summary: Workflow requesting key entry "xxx" from example.loc >>>>> (a) example.loc empty, gets empty path, fails cleanly. >>>>> (b) example.loc contains xxx, gets correct path, works. >>>>> (c) example.loc non empty but lacks xxx, runs with WRONG path. >>>>> >>>>> Peter > ___________________________________________________________ > Please keep all replies on the list by using "reply all" > in your mail client. To manage your subscriptions to this > and other Galaxy lists, please use the interface at: > https://lists.galaxyproject.org/ > > To search Galaxy mailing lists use the unified search at: > http://galaxyproject.org/search/mailinglists/ ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/