Thanks for the pointers, I tried this and it didn't work for me. After I
modified *cm/util/galaxy_conf.py *CM would no longer successfully start up
my cluster. I suspect user-induced-syntax-error at my end when
I modified the file, I am a perl guy and my python is not so great :(
What I did that worked was to change the default ftp directory to a
symbolic link pointing to my desired location. After this the UI can see
and access the file system I want to use.
Obviously it would be fantastic to have a slick mechanism to specify and
persist any valid galaxy configuration mods, in any case I am good to go
Thanks, your help is greatly appreciated!
On Mon, Mar 30, 2015 at 8:52 PM, Enis Afgan <enis.af...@irb.hr> wrote:
> Hi David,
> I'm afraid some of that is embedded in CloudMan's code. Given you're
> restarting your cluster, you can unpack cm.tar.gz from your cluster's
> bucket (you can find this on CloudMan's Admin page) and edit
> *cm/util/galaxy_conf.py* to change the value for desired variables (under
> *populate_galaxy_paths* method). Once you're done, just create the
> tarball of the source again and upload it back to your cluster's bucket.
> Let us know if you that doesn’t work for you. We're working on a better
> solution for this.
> On Mon, Mar 30, 2015 at 5:58 PM, David Kovalic <kova...@analome.com>
>> I am trying to change the ftp dir (and some other modifications) vs. the
>> standard Galaxy Cloudman config.
>> When I modify the appropriate line in
>> /mnt/galaxy/galaxy-app/universe_wsgi.ini on my running cloud instance: my
>> changes disappear when I terminate/restart the cluster.
>> When I modify universe_wsgi.ini.cloud and upload to the S3 bucket the
>> file gets overwritten by the default when I restart the cluster...
>> I can't find anywhere on the net which file I need to modify in order to
>> have config changes persist.
>> Any help would be greatly appreciated.
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