Hi Nikhil, Have a look at https://toolshed.g2.bx.psu.edu/view/devteam/data_manager_fetch_genome_dbkeys_all_fasta to add a new genome/fasta. Once you have the genome entry, then you can use additional Data Manager to make tool specific (bwa, samtools, etc) indexes.
Thanks for using Galaxy, Dan On Apr 2, 2015, at 5:41 AM, Nikhil Joshi <najo...@ucdavis.edu> wrote: > Of course this would be for a local install of galaxy. > > On Thu, Apr 2, 2015 at 2:29 AM, Nikhil Joshi <najo...@ucdavis.edu> wrote: > Hi all, > > Is it possible to use a DataManager (or anything) to allow a user (or admin) > to upload their genome of choice and have it be indexed and be used as a > built-in/cached genome *without* having to go on the command-line? I.e., only > using the Galaxy interface? > > - Nik. > > -- > Nikhil Joshi > Bioinformatics Analyst/Programmer > UC Davis Bioinformatics Core > http://bioinformatics.ucdavis.edu/ > najoshi -at- ucdavis -dot- edu > 530.752.2698 (w) > > > > -- > Nikhil Joshi > Bioinformatics Analyst/Programmer > UC Davis Bioinformatics Core > http://bioinformatics.ucdavis.edu/ > najoshi -at- ucdavis -dot- edu > 530.752.2698 (w) > ___________________________________________________________ > Please keep all replies on the list by using "reply all" > in your mail client. To manage your subscriptions to this > and other Galaxy lists, please use the interface at: > https://lists.galaxyproject.org/ > > To search Galaxy mailing lists use the unified search at: > http://galaxyproject.org/search/mailinglists/
___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
