You probably need to set the <stdio> tag, since due to a
historical design choice by default any output on stderr
is treated as an error. See:

https://wiki.galaxyproject.org/Admin/Tools/ToolConfigSyntax

Peter

On Tue, Apr 28, 2015 at 4:41 PM, Ryan G <ngsbioinformat...@gmail.com> wrote:
>  Hi - I implemented a tool I us into Galaxy but when I run the tool view
> Galaxy, Galaxy thinks the tool failed.  I checked the output file the tools
> create, and it succeeded.
>
> How do I tell Galaxy that a tool it ran was successful?  Is it something in
> my XML file?  The tool is outputting some info to stderr.  Could this be
> why?
>
> ___________________________________________________________
> Please keep all replies on the list by using "reply all"
> in your mail client.  To manage your subscriptions to this
> and other Galaxy lists, please use the interface at:
>   https://lists.galaxyproject.org/
>
> To search Galaxy mailing lists use the unified search at:
>   http://galaxyproject.org/search/mailinglists/
___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
  https://lists.galaxyproject.org/

To search Galaxy mailing lists use the unified search at:
  http://galaxyproject.org/search/mailinglists/

Reply via email to