On Wed, Apr 29, 2015 at 6:33 AM, Simon Gladman <simon.glad...@unimelb.edu.au> wrote: > Hi dev, > > Now that the <code> tagset is deprecated, how do we replace that > functionality. For example the "get microbial data" tool runs the script > listed in the <code> tagset to load the list of available microbe data when > the tool is selected. This doesn't seem to work in the latest stable 15.03.1 > or 15.03.2. > > How do we configure tools like this now? Or is there an updated version of > the microbial_import tool? > > Cheers, > > Simon.
Good question Simon. I am still using <code> for advanced parameter validation, e.g. https://github.com/peterjc/pico_galaxy/blob/64aecfa6041b3b7fe2c70a30236a7aa15e650523/tools/mira4_assembler/mira4_de_novo.xml i.e. Validation before the job gets submitted to the cluster or run. If the <code> tag suddenly goes away, my tool will still work but would be a little less user friendly (some errors would only be spotted after the tool starts running). Peter ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/