Hi David, can you open an issue at https://github.com/galaxyproject/docker-build ?
Thanks, Nicola Il 18.06.2015 21:55 David Trudgian ha scritto: > Installed bowtie2 from the toolshed, which brings in package_bowtie_2_2_4, which downloads bowtie binaries from depot.galaxyproject.org > > http://depot.galaxyproject.org/package/linux/x86_64/bowtie2/bowtie2-2.2.4-linux-x86_64.tgz > > Jobs submitted on our setup, running as a 'real user' (not galaxy user) via pulsar + SLURM fail with a permissions error. This is due to the permissions on some of the bowtie executables in the .tar.gz from depot being owner/group executable only. Other users cannot run bowtie2: > > -rwxrwx---. 1 galaxy galaxy 18K Oct 22 2014 bowtie2 > > If I download the tar.gz from depot manually and extract then I get: > > -rwxrwx--- 1 dtrudgian biohpc_admin 18K Oct 22 2014 bowtie2 > > Could the .tar.gz be fixed, so that the executables will work in a run as real user configuration? Is there any sensible way Galaxy could enforce permissions to guard against this issue? > > Cheers, > > -- > > David Trudgian Ph.D. > > Computational Scientist, BioHPC > > UT Southwestern Medical Center > > Dallas, TX 75390-9039 > > Tel: (214) 648-4833 > > Please contact biohpc-help@utsouthwestern with general BioHPC inquries. > > ------------------------- > > UT Southwestern > > Medical Center > > The future of medicine, today. Connetti gratis il mondo con la nuova indoona: hai la chat, le chiamate, le video chiamate e persino le chiamate di gruppo. E chiami gratis anche i numeri fissi e mobili nel mondo! Scarica subito l’app Vai su https://www.indoona.com/
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