What is HDA?

Sent from my iPhone

> On Jun 26, 2015, at 1:10 PM, Martin Čech <mar...@bx.psu.edu> wrote:
> 
> Hello Ryan,
> 
> for interacting with libraries through the Bioblend:
> http://bioblend.readthedocs.org/en/latest/api_docs/galaxy/all.html#module-bioblend.galaxy.libraries
> 
> for loading data to libraries form the Galaxy's system (e.g. after FTP 
> upload, or when admin):
> https://github.com/galaxyproject/galaxy/blob/dev/lib/galaxy/webapps/galaxy/api/lda_datasets.py#L401
> 
> for uploading new files or importing from HDA:
> https://github.com/galaxyproject/galaxy/blob/dev/lib/galaxy/webapps/galaxy/api/library_contents.py#L144
> 
> Hope this helps.
> 
> M.
> 
>> On Fri, Jun 26, 2015 at 12:56 PM Ryan G <ngsbioinformat...@gmail.com> wrote:
>> By browsing the api code, I discovered library_contents.py that looks like 
>> it should be used.  Why this and not folder_contents.py?  There seems to be 
>> overlap of these two.  I would expect to upload files to folders within 
>> libraries...
>> 
>> 
>>> On Thu, Jun 25, 2015 at 2:43 PM, Ryan G <ngsbioinformat...@gmail.com> wrote:
>>> Hi all - I'm trying to figure out how to script the ability to upload data 
>>> (fastq) files to Galaxy via the API.
>>> 
>>> I can get the Library's root_folder_id, but am unsure of what the API call 
>>> is to upload a file.  I'm constructing this dictionary:
>>> 
>>>     data = {}
>>>     data['folder_id'] = galaxyFolderId
>>>     data['create_type'] = 'file'
>>>     data['file_type'] = 'fastq'
>>>     data['upload_option'] = 'upload_paths'
>>>     data['filesystem_paths'] = fileToUpload
>>>     data['link_data_only'] = 'link_to_files'
>>> 
>>> I assume this is the correct format based on other code I've seen, but I'm 
>>> not sure what the actual submit call should be. 'api/libraries/' or 
>>> 'api/folders'????
>> 
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