History Dataset Association. i.e. if you already have the dataset in
history you can very easily import it to a data library.

M.

On Fri, Jun 26, 2015 at 1:23 PM Ryan G <ngsbioinformat...@gmail.com> wrote:

> What is HDA?
>
> Sent from my iPhone
>
> On Jun 26, 2015, at 1:10 PM, Martin Čech <mar...@bx.psu.edu> wrote:
>
> Hello Ryan,
>
> for interacting with libraries through the Bioblend:
>
> http://bioblend.readthedocs.org/en/latest/api_docs/galaxy/all.html#module-bioblend.galaxy.libraries
>
> for loading data to libraries form the Galaxy's system (e.g. after FTP
> upload, or when admin):
>
> https://github.com/galaxyproject/galaxy/blob/dev/lib/galaxy/webapps/galaxy/api/lda_datasets.py#L401
>
> for uploading new files or importing from HDA:
>
> https://github.com/galaxyproject/galaxy/blob/dev/lib/galaxy/webapps/galaxy/api/library_contents.py#L144
>
> Hope this helps.
>
> M.
>
> On Fri, Jun 26, 2015 at 12:56 PM Ryan G <ngsbioinformat...@gmail.com>
> wrote:
>
>> By browsing the api code, I discovered library_contents.py that looks
>> like it should be used.  Why this and not folder_contents.py?  There seems
>> to be overlap of these two.  I would expect to upload files to folders
>> within libraries...
>>
>>
>> On Thu, Jun 25, 2015 at 2:43 PM, Ryan G <ngsbioinformat...@gmail.com>
>> wrote:
>>
>>> Hi all - I'm trying to figure out how to script the ability to upload
>>> data (fastq) files to Galaxy via the API.
>>>
>>> I can get the Library's root_folder_id, but am unsure of what the API
>>> call is to upload a file.  I'm constructing this dictionary:
>>>
>>>     data = {}
>>>     data['folder_id'] = galaxyFolderId
>>>     data['create_type'] = 'file'
>>>     data['file_type'] = 'fastq'
>>>     data['upload_option'] = 'upload_paths'
>>>     data['filesystem_paths'] = fileToUpload
>>>     data['link_data_only'] = 'link_to_files'
>>>
>>> I assume this is the correct format based on other code I've seen, but
>>> I'm not sure what the actual submit call should be. 'api/libraries/' or
>>> 'api/folders'????
>>>
>>
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>
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