Sure I could probably step up to the plate on that one.  I haven't reported it 
to NCBI - it didn't twig that this was an exit code > 0 .  I'll sneak it into 
BOSC codefest maybe!


Hsiao lab, BC Public Health Microbiology & Reference Laboratory, BC Centre for 
Disease Control
655 West 12th Avenue, Vancouver, British Columbia, V5Z 4R4 Canada
From: Peter Cock []
Sent: Saturday, July 04, 2015 8:11 AM
To: Dooley, Damion
Subject: Re: [galaxy-dev] Cosmetic Makeblastdb error promulgated through wrapper

Hi Damion,

The NCBI have a bug here - if it is just a warning, it shouldn't
say "Error". We had something similar before:

Error: (1431.1) FASTA-Reader: Warning: FASTA-Reader: Ignoring FASTA
modifier(s) found because the input was not expected to have any.

In that case the NCBI fixed it, see

Did you (or Keith Bradnam) report this to the NCBI?

In the short term we can probably tweak the regex so that these
"Error: *: Warning: *" lines on stderr are not treated as errors?
Do you fancy working on this?

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