I have adopted /mnt/galaxy/galaxy-app/config/job_conf.xml:
I added a destination with following param:
<param id="nativeSpecification">-N1 --cpus-per-task 1

Galaxy service was restarted after chaning this.
Now I get the error "Unable to run job due to a misconfiguration of the
Galaxy job running system. Please contact a site administrator." when I try
to run a job.
Looking in the log gives:

galaxy.jobs.runners.drmaa DEBUG 2015-07-06 22:50:40,187 (493)
submitting file
> galaxy.jobs.runners.drmaa DEBUG 2015-07-06 22:50:40,187 (493) native 
> specification is: -N1 --cpus-per-task 1 --mem-per-cpu=4G
> galaxy.jobs.runners.drmaa ERROR 2015-07-06 22:50:40,187 (493) 
> drmaa.Session.runJob() failed unconditionally
> Traceback (most recent call last):
> [...]
> InvalidAttributeValueException: code 14: Invalid native specification: -N1 
> --cpus-per-task 1 --mem-per-cpu=4G

Well. running this as galaxy user in the console with

$ srun -N1 --cpus-per-task 1 --mem-per-cpu=4G
> /mnt/galaxy/tmp/job_working_directory/000/494/galaxy_494.sh

 , it actually runs good.

I was wondering if this is connected with the fact that the log states "
galaxy.jobs.runners.drmaa" and not something like galaxy.jobs.runners.slurm,
like defined in the job_conf.xml: <plugin id="slurm" type="runner"
load="galaxy.jobs.runners.slurm:SlurmJobRunner" />

So - What is going wrong here? Am I working on the wrong job_conf.xml?
What does galaxy do here?

Thanks for help!Alexander
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