Hello,

The Galaxy "Variant Annotator" tool uses this loc file : tool-data/gatk2_picard_indexes.loc


This file is available in tool-data/ directory and completed but the dropdown menu of "Variant Annotator" tool is empty.

more gatk2_picard_indexes.loc
#This is a sample file distributed with Galaxy...
oviAri1 oviAri1 Ovis:oviAri1    
/bank/Galaxy/oviAri1/current/flat/picard_index/oviAri1.dict

ls /bank/Galaxy/oviAri1/current/flat/picard_index/
oviAri1.dict  oviAri1.fa  oviAri1.fa.fai


Could you please tell me where does my mistake ?

Kind regards,
Sarah Maman
--
Sarah Maman
INRA - LGC - SIGENAE
Chemin de Borde-Rouge - Auzeville - BP 52627
31326 Castanet-Tolosan cedex - FRANCE
Tel:   +33(0)5.61.28.57.08
Fax:   +33(0)5.61.28.57.53

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