Hi Martin, Is there anything in the syslog?
--nate On Thu, Jul 16, 2015 at 11:26 AM, Martin Vickers <mj...@aber.ac.uk> wrote: > -----BEGIN PGP SIGNED MESSAGE----- > Hash: SHA1 > > Hi All, > > I have a weird issue that's just cropped up. After a new install of > galaxy (checked out on Monday from github) on a ubuntu vm, using > postgres rather than sqlite as well as a few other production > recommendations, I started playing around with the Data Libraries > functionality. I linked a bunch of fastq.gz files into galaxy (around > 150 in total) and everything was working fine. I went home and the > next day, it was down. > > I tried to start it up as usual (using an init.d script), it worked > for less than a minute and then disappeared again. So I tried running > it as the galaxy user using ./run.sh and I get a seg fault; > > Starting server in PID 23173. > serving on http://144.124.110.39:8080 > Segmentation fault > > Tried again with strace > > Starting server in PID 23552. > serving on http://144.124.110.39:8080 > [{WIFSIGNALED(s) && WTERMSIG(s) == SIGKILL}], 0, NULL) = 23552 > - --- SIGCHLD {si_signo=SIGCHLD, si_code=CLD_KILLED, si_pid=23552, > si_status=SIGKILL, si_utime=1590, si_stime=1930} --- > rt_sigreturn() = 23552 > write(2, "Killed\n", 7Killed > ) = 7 > read(10, "", 8192) = 0 > exit_group(137) = ? > +++ exited with 137 +++ > > I can't see anything odd in the log file and I've turned debugging on > in galaxy.ini. I'm at a bit of a loss. Does anyone know what might be > causing it? > > Cheers, > > - -- > Dr. Martin Vickers > > Data Manager/HPC Systems Administrator > Institute of Biological, Environmental and Rural Sciences > IBERS New Building > Aberystwyth University > > w: http://www.martin-vickers.co.uk/ > e: mj...@aber.ac.uk > t: 01970 62 2807 > -----BEGIN PGP SIGNATURE----- > Version: GnuPG v2.0.14 (GNU/Linux) > > iQEcBAEBAgAGBQJVp80YAAoJEHa0a8GkKQgIGlIH/1VfAPbs/5ApDBdyoOV5qf1y > oCOv93IojARyfI0ksSjF8NRNzw5fNp1R8AzZzomaR3SOUkBuZutre600sy0azTZw > E6gjxtMuvaMyEsOTXtToVarVJT0wTG8+5DJRIYLxtYZm7kvbZK0WuzrN2zDT6663 > Rnm7zI/zBpTAyp6uXwgmz0x5gpH6KFwRcEHEbU3JWy6nj1zithJShwYPlBuhT5IB > OaPwOKflcZpZ8NBTEGsh038JrkU+eE50a9aEjQ2m/DpfM/TN9ujgEFm1dyy/iQS7 > ewwQUpWJDkA/u0ZX602dsNdV2LvGuKVVMEHiQ25zaUQZ/iGTwKBQsFM2LlDybgA= > =jzYG > -----END PGP SIGNATURE----- > ___________________________________________________________ > Please keep all replies on the list by using "reply all" > in your mail client. To manage your subscriptions to this > and other Galaxy lists, please use the interface at: > https://lists.galaxyproject.org/ > > To search Galaxy mailing lists use the unified search at: > http://galaxyproject.org/search/mailinglists/
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