Hi Nate, all
I would like to add my own version of the problem to this.
I, or rather my (inherited) Galaxy instance (which should be running 15.05+,
how do I find out?), have/s similar symptoms as Richard's did. In my case it
only occurs to a single user and we are not able to execute the "Saved
Histories" command any more. Galaxy will fail with
The proxy server received an invalid response from an upstream server.
The proxy server could not handle the request GET /history/list.
Reason: Error reading from remote server
Due to some problem with the psql-client I cannot find the potential
perpetrators (my user has lots of bam files in various histories) and since he
cannot switch histories, we cannot even update the metadata for his datasets.
Is there a possibility to do that via the API?
Any insight/help would be greatly appreciated!
On 08/07/15 21:04, Poole, Richard wrote:
I am having trouble right now with my own personal account on my production
server. Grid refreshes are taking a huge amount of time (e.g. when viewing
‘saved histories’ or even generating the dataset list for a single history). My
account is very full of data (1TB), could it be this?
There are no obvious messages in the logs though so I am a bit stumped as to
why.I do not have the same trouble when impersonating other users with fairly
full accounts. Perhaps a database issue (I do not know how to ‘cleanup’ the
database or indeed Galaxy user accounts). Any thoughts?
Dr. Christian Schudoma
Bioinformatics Support Officer
The Sainsbury Laboratory
Norwich Research Park
Norwich NR4 7UH
+44 (0) 1603 450 601
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