Yes, I'm using LSF with Galaxy at TGAC.
Unfortunately I don't have
suggestions for your other problems.
Il 04.08.2015 13:27
Hakeem Almabrazi ha scritto:
> Thank you Nicola,
> I will play with
these options and see how it works.
> Have you played with LSF and
> Thank you,
> -----Original Message-----
Nicola Soranzo [mailto:nsora...@tiscali.it ]
> Sent: Tuesday, August
04, 2015 2:23 PM
> To: Hakeem Almabrazi
firstname.lastname@example.org Subject: Re: [galaxy-dev] LSF
cluster wierd behaviours!
> Il 04.08.2015 07:57 Hakeem Almabrazi ha
>> Hello everyone, I was able to setup galaxy to work with
our HPC cluster using the LSF scheduler. So far so good except with few
exceptions: ... 3. Finally, how do I control the resources (i.e cores
for a job ) given to a submitted job on Galaxy?
> Hi Hakeem,
need to specify new destinations in config/job_conf.xml, for example if
you want to submit jobs asking for 4 cores on the same cluster node,
use:-q queue_name -n 4 -R "span[hosts=1]"
> Then in the section of
> for each tool that should use 4 cores.
More info at:
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