Tiago,

Some work is already in progress for that. Please see

   - http://wookoouk.github.io/galaxyFlavorGenerator/
   - https://github.com/galaxyFlavorsGenerators/galaxyFlavorGenerator/

I don't believe it handles configuration of the cluster backend, but I'm
sure that would be a good addition to the project.

Ciao,
Eric

2015-08-05 10:02 GMT-05:00 Tiago Rodrigues Antao <t...@popgen.net>:

> On Tue, 4 Aug 2015 17:26:00 +0000
> "Kandalaft, Iyad" <iyad.kandal...@agr.gc.ca> wrote:
>
> > As a supplement to Oksana's original inquiry, we, at AAFC, couple
> > Galaxy to SGE  and possibly a different grid engine in the future for
> > job scheduling.  The old-fashioned way of doing that is to unify
> > storage path and UID/GID between the application server and cluster.
>
>
> I am starting to warm of the idea of making a small web interface that
> asks for a few configuration options:
> 1. type of grid engine
> 2. desired docker/galaxy flavour (RNA, exome, WGS, ...)
> 3. ... (e.g. intial admin user and password)
>
> and would pull Björn's relevant Dockerfile, patch it and generate a new
> one, tailored to the need of the user.
>
> I think it is impossible to have a set of dockerfiles for all the
> desired configurations (think analysis flavours times number of cluster
> types - for example).
>
> I will need to implement something like this very soon, and I would not
> mind to do it in a way that the community could reuse...
>
> So comments would be appreciated...
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-- 
Eric Rasche
Programmer II

Center for Phage Technology
Rm 312A, BioBio
Texas A&M University
College Station, TX 77843
404-692-2048
e...@tamu.edu
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