I am just following up with a note that this has been fully resolved.
Please let us know if you find any more problems.
Thank you for using Galaxy.
On Wed, Aug 12, 2015 at 7:21 PM Aaron Petkau <aaron.pet...@gmail.com> wrote:
> Heh, always something that's discovered after the fact. Happens to me all
> the time. Thanks for getting back to me quickly. Looks like the fix you
> did works. Only other tool is sam_to_bam
> Hopefully not too much trouble.
> Thanks again Martin,
> On Wed, Aug 12, 2015 at 5:10 PM, Martin Čech <mar...@bx.psu.edu> wrote:
>> Hi Aaron,
>> this is most probably connected with a bug that we discovered today in
>> the 'reset metadata for all my repositories' feature. Unfortunately we
>> discovered it by running it on Main Tool Shed. We have an alternate (time
>> consuming) way of fixing individual repos (like I just did for the
>> samtools_mpileup) so if you give me a list of tools you need to use with
>> old revisions I will make sure they are in a good shape.
>> This only affects devteam repos.
>> We are working on a fix, please bare with us.
>> Thank you for using Galaxy!
>> On Wed, Aug 12, 2015 at 5:44 PM Aaron Petkau <aaron.pet...@gmail.com>
>>> Hey everyone,
>>> So I rely a lot on specific versions of tools in the toolshed, and am
>>> often testing out the install process to make sure everything's working.
>>> Today I noticed that my install process was failing, and it looks like it's
>>> due to not being able to install previous versions of tools through the
>>> API. It seems to default to installing the latest version of a tool.
>>> For example, for the tool samtools_mpileup
>>> if I run the code:
>>> in bioblend (to install revision 973fea5b4bdf) I instead get the latest
>>> (aa0ef6f0ee89) revision installed. I can see the previous revision still
>>> I'm wondering if something has changed here? I remember being able to
>>> install old versions of tools through the API before, but maybe I'm getting
>>> mixed up?
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